View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_407 (Length: 214)
Name: NF10049A_low_407
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_407 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 18872200 - 18872035
Alignment:
| Q |
21 |
attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg |
120 |
Q |
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| T |
18872200 |
attatgcatgtcacagtttgtgcattgttatccaaatcgtggatagagtttcccaaatt---gagccaatattttgatatcaacaattattaattgtatg |
18872104 |
T |
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| Q |
121 |
agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttcacgtgttgtaagttgttct |
189 |
Q |
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| T |
18872103 |
agatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaagttgttct |
18872035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 19394838 - 19394984
Alignment:
| Q |
21 |
attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg |
120 |
Q |
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| T |
19394838 |
attatgcatgtcacagtttgtgcattgttatccaattcgtggatagagttttccaaat---agagcaaatattttgatatcaacaattaataattgtatg |
19394934 |
T |
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| Q |
121 |
agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttc |
170 |
Q |
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| T |
19394935 |
agatgagatcatatgtgattgtaacactgttgtttctgaatttatgtttc |
19394984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 19382584 - 19382737
Alignment:
| Q |
21 |
attatgcatgtcacagtttgtgcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatg |
120 |
Q |
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| T |
19382584 |
attatgcatgtcgcagtttgtgccttgttatccaaatcgtggatagagtttaccaa---atagagccaatattttgatatcaacaattaataattgtatg |
19382680 |
T |
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| Q |
121 |
agattaaatcatatgtgattgtaacactgttgattctgaattcatgtttcacgtgtt |
177 |
Q |
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| T |
19382681 |
agatgagatcatatgtgattgtaatactgttgtttctgaattcatgtttcacttgtt |
19382737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 177
Target Start/End: Original strand, 19439869 - 19440004
Alignment:
| Q |
42 |
gcattgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatgagattaaatcatatgtgatt- |
140 |
Q |
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| T |
19439869 |
gcattgttatcgaaatcgtggatataatt-ttcaaa--atagagccaatattgtgatatcgataattaagagttgtatgagatgagatcatatgtgatta |
19439965 |
T |
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| Q |
141 |
--gtaacactgttgattctgaattcatgtttcacgtgtt |
177 |
Q |
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| T |
19439966 |
ttgtaacactattgcttctgaattcatgtttcacatgtt |
19440004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Original strand, 19466064 - 19466099
Alignment:
| Q |
154 |
ttctgaattcatgtttcacgtgttgtaagttgttct |
189 |
Q |
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| T |
19466064 |
ttctgaattcatgtttcacttgttgtaagttgttct |
19466099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 24493134 - 24493086
Alignment:
| Q |
133 |
atgtgattgtaacactgttgattctgaattcatgtttcacgtgttgtaa |
181 |
Q |
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| T |
24493134 |
atgtgattgtaccattgttgattttgaattcatctttcacttgttgtaa |
24493086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 25464809 - 25464941
Alignment:
| Q |
46 |
tgttatgcaaatcgtggatagagttgttcaaattatagagccaaagttttgatatcaacaattaataatggtatgagattaaatcatatgtgattgtaac |
145 |
Q |
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| T |
25464809 |
tgttatgcaaatggtggatataatt-ttcaaa--atagagccaatattgtaatataaacaataaaaagttgtatgagatgatatcatatgtcattgtacc |
25464905 |
T |
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| Q |
146 |
actgttgattctgaattcatgtttcacgtgttgtaa |
181 |
Q |
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| T |
25464906 |
aatgttgctgctgaattcaattttcacttgttgtaa |
25464941 |
T |
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