View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_408 (Length: 214)

Name: NF10049A_low_408

Description: NF10049A

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF10049A_low_408

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 139; E-Value: 6e-73

Query Start/End: Original strand, 19 - 202

Target Start/End: Complemental strand, 31998088 - 31997905

Alignment:

Q	19	aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta	118	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	31998088	aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta	31997989	T

Q	119	atatacttccttccggaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattctt	202	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	31997988	atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcattttctt	31997905	T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 111 - 205

Target Start/End: Complemental strand, 15843120 - 15843026

Alignment:

Q	111	agcagctaatatacttccttccggaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcatattcttcga	205	Q
		\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	15843120	agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgaggtattttcttcga	15843026	T

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