View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_41 (Length: 415)
Name: NF10049A_low_41
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 34008058 - 34007648
Alignment:
| Q |
1 |
ttcgtagtcaattctttatattcatatccaactgtgataatacttttttcatttaaatttatagcaaccatgagtatttcaattgtgaactattaactta |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
34008058 |
ttcgtattcaattctttatattcatatccaactgtgataatacttttttcatttaaatttatagcaaccatgagtatttca-ttgtgaactattaattta |
34007960 |
T |
|
| Q |
101 |
catattaatttgatttgatgtaagttttagtgagcaaggttatcatgtagtatttcattttaagccgttttgtttaaaaatattgtaaccatatataaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007959 |
catattaatttgatttgatgtaagttttattgagcgaggttatcatgtagtatttcattttaagccgttttgtttaaaaatattgtaaccatatataaag |
34007860 |
T |
|
| Q |
201 |
tatgacgttttttccttcttctaaattttcttgaaaggcatactagcatgattttcatttctatattgtatttttatcaagttcttttgtgaaataccaa |
300 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007859 |
tatgacgttttttccctcttctaaattttcttgaaaggcatactaggatgattttcatttctatattgtatttttatcaagttcttttgtgaaataccaa |
34007760 |
T |
|
| Q |
301 |
tcatacgaagtagtttgatgtttgaatattatatgtcatattctgctttattttattagatactatatatcagagtcttgaagcttattttgtacttgat |
400 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34007759 |
tcatacgaagtagtttgatgtttgaatatcatatgtcatattctgctttattttattagatactatatatcagagtcttgaagcttattttgtacttgac |
34007660 |
T |
|
| Q |
401 |
attcttcgacat |
412 |
Q |
| |
|
||||||||||| |
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|
| T |
34007659 |
tttcttcgacat |
34007648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 413
Target Start/End: Original strand, 29282732 - 29282816
Alignment:
| Q |
329 |
ttatatgtcatattctgctttattttattagatactatatatcagagtcttgaagcttattttgtacttgatattcttcgacatc |
413 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| || |||| |||||||||| ||||||| |||| ||||||| |
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|
| T |
29282732 |
ttataggtcatattctgctttattttattagacgctatatatcatagccttggagcttattttatacttgactttctccgacatc |
29282816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 215 - 322
Target Start/End: Complemental strand, 12634012 - 12633903
Alignment:
| Q |
215 |
cttcttctaaattttcttgaaaggcata--ctagcatgattttcatttctatattgtatttttatcaagttcttttgtgaaataccaatcatacgaagta |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12634012 |
cttcttctaaatcttcttgaaaggcatatactaggatgattttcatttcaatattgtatttttatcaagttcttttgtgaaataccaatcatacaaagta |
12633913 |
T |
|
| Q |
313 |
gtttgatgtt |
322 |
Q |
| |
|
|| ||||||| |
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|
| T |
12633912 |
gtctgatgtt |
12633903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 413
Target Start/End: Complemental strand, 28293626 - 28293542
Alignment:
| Q |
329 |
ttatatgtcatattctgctttattttattagatactatatatcagagtcttgaagcttattttgtacttgatattcttcgacatc |
413 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||||||||| || |||| |||||||||||||||||| |||| ||||||| |
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|
| T |
28293626 |
ttataggtcatattatgctttattttattagacgctatatatcatagccttggagcttattttgtacttgactttctccgacatc |
28293542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 43780627 - 43780660
Alignment:
| Q |
325 |
aatattatatgtcatattctgctttattttatta |
358 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
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|
| T |
43780627 |
aatattatatgtcatattctgctttcttttatta |
43780660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 367
Target Start/End: Complemental strand, 47960558 - 47960518
Alignment:
| Q |
327 |
tattatatgtcatattctgctttattttattagatactata |
367 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | |||||| |
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|
| T |
47960558 |
tattatatgttatattctgctttattttattacacactata |
47960518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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