View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_423 (Length: 207)
Name: NF10049A_low_423
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_423 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34008180 - 34008386
Alignment:
| Q |
1 |
tatatatttgaaacgactacaacgttaaatagaaatgataccaaaatcatgataaaagcagcatttcaacaatagatgtacacagggcaccacttacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
34008180 |
tatatatttgaaacgactacaacgttagatagaaatgataccaaaatcatgataaaagcaccatttcaacaatagatgtatacatggcaccacttacaaa |
34008279 |
T |
|
| Q |
101 |
acactttatctaccaacaaagaaacaccactaccaattccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34008280 |
acactctatctaccaacaaagaaacaccactaccaattccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttg |
34008379 |
T |
|
| Q |
201 |
caagaat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
34008380 |
caagaat |
34008386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 30051257 - 30051361
Alignment:
| Q |
33 |
aaatgataccaaaatcatgataaaa-gcagcatttcaacaatagatgtacacagggcaccacttacaaaacactttatctaccaacaaagaaacaccact |
131 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||| ||||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
30051257 |
aaatgacaccaaaatcatgataaaaagcaccattataacaaaagatgtactcattgcaccacttacaaaacactctatcggtcaacaaagaaacaccact |
30051356 |
T |
|
| Q |
132 |
accaa |
136 |
Q |
| |
|
||||| |
|
|
| T |
30051357 |
accaa |
30051361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 30142301 - 30142405
Alignment:
| Q |
33 |
aaatgataccaaaatcatgataaaa-gcagcatttcaacaatagatgtacacagggcaccacttacaaaacactttatctaccaacaaagaaacaccact |
131 |
Q |
| |
|
|||||| |||||||||||||||||| ||| |||| ||||| |||||||| || ||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
30142301 |
aaatgacaccaaaatcatgataaaaagcaccattataacaaaagatgtactcattgcaccacttacaaaacactctatcggtcaacaaagaaacaccact |
30142400 |
T |
|
| Q |
132 |
accaa |
136 |
Q |
| |
|
||||| |
|
|
| T |
30142401 |
accaa |
30142405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 30051416 - 30051485
Alignment:
| Q |
134 |
caattccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttgcaa |
203 |
Q |
| |
|
|||||||||||||||| |||| | |||||| |||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30051416 |
caattccatgaaggtaacaatctacgaaaatctcttcatgaactcgccaattatggagacacttatgcaa |
30051485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 30142460 - 30142529
Alignment:
| Q |
134 |
caattccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttgcaa |
203 |
Q |
| |
|
|||||||||||||||| |||| | |||||| |||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30142460 |
caattccatgaaggtaacaatctacgaaaatctcttcatgaactcgccaattatggagacacttatgcaa |
30142529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 30243630 - 30243699
Alignment:
| Q |
134 |
caattccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttgcaa |
203 |
Q |
| |
|
|||||||||||||||| |||| | |||||| |||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30243630 |
caattccatgaaggtaacaatctacgaaaatctcttcatgaactcgccaattatggagacacttatgcaa |
30243699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 30089435 - 30089500
Alignment:
| Q |
138 |
tccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttgcaa |
203 |
Q |
| |
|
|||||||||||| |||| | |||||| |||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30089435 |
tccatgaaggtaacaatctacgaaaatctcttcatgaactcgccaattatggagacacttatgcaa |
30089500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 30126039 - 30126104
Alignment:
| Q |
138 |
tccatgaaggtagcaatacatgaaaatatcttcatgaattcgtcagttatggagacacttttgcaa |
203 |
Q |
| |
|
|||||||||||| |||| | |||||| |||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
30126039 |
tccatgaaggtaacaatctacgaaaatctcttcatgaactcgccaattatggagacacttatgcaa |
30126104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University