View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_425 (Length: 206)

Name: NF10049A_low_425
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_425
NF10049A_low_425
[»] chr7 (2 HSPs)
chr7 (134-206)||(25633835-25633909)
chr7 (1-43)||(25633746-25633788)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 25633835 - 25633909
Alignment:
Q  134 gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatat--acataaaatgacga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  25633835 gcatatttctctgaaaactattctggtatataagctgaaacaccaaagaaatgatatatacacataaaatgacga 25633909  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25633746 - 25633788
Alignment:
Q  1 gaactgtttgtgcctcctcggcctcctatttacttcggtgacg 43  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  25633746 gaactgtttgtgcctcctcggcctcctatttacctcggtgacg 25633788  T

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