View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_428 (Length: 204)

Name: NF10049A_low_428
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_428
NF10049A_low_428
[»] chr2 (18 HSPs)
chr2 (15-184)||(44624829-44624998)
chr2 (15-164)||(44615456-44615605)
chr2 (15-175)||(39153106-39153266)
chr2 (23-151)||(39472763-39472891)
chr2 (20-175)||(39387469-39387624)
chr2 (15-151)||(39138693-39138826)
chr2 (15-148)||(39371164-39371297)
chr2 (15-175)||(39216704-39216864)
chr2 (15-175)||(39396627-39396787)
chr2 (21-150)||(39205742-39205871)
chr2 (20-175)||(39196485-39196640)
chr2 (20-175)||(39413004-39413159)
chr2 (21-143)||(44895114-44895236)
chr2 (15-148)||(39380496-39380629)
chr2 (24-150)||(39478294-39478420)
chr2 (20-175)||(39421161-39421313)
chr2 (21-150)||(39223764-39223893)
chr2 (47-166)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (15-151)||(44730162-44730298)
chr8 (15-176)||(44949869-44950030)
chr8 (15-173)||(45343012-45343170)
[»] chr5 (2 HSPs)
chr5 (20-176)||(17060698-17060854)
chr5 (20-175)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (15-176)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (15-151)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (21-78)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 44624829 - 44624998
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 184  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 44615456 - 44615605
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttg 164  Q
    ||| ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 39153106 - 39153266
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || ||||||||||    
T  39153106 gagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgat 39153205  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
    ||||||||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153206 ttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 39472891 - 39472763
Alignment:
Q  23 gcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggat 122  Q
    ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| ||    
T  39472891 gcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaat 39472792  T
Q  123 tgcatacttattttgatgaagatgaagtc 151  Q
    ||| ||||| |||||||||||||||||||    
T  39472791 tgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 39387624 - 39387469
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||||    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
    |  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 39138693 - 39138826
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| ||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  |    
T  39138693 gagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagt 39138789  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtc 151  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  39138790 ttatgaattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||||||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  115 ttatggattgcatacttattttgatgaagatgaa 148  Q
    ||||||||||  ||||| ||||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 39216704 - 39216864
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| |||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
    ||||||||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 39396787 - 39396627
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| |||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| ||    
T  39396787 gagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaat 39396688  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
    ||||||||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396687 ttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 39205871 - 39205742
Alignment:
Q  21 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 120  Q
    ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||      
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  121 attgcatacttattttgatgaagatgaagt 150  Q
    ||||| |  || ||||||| ||||||||||    
T  39205771 attgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 39196640 - 39196485
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    |||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||||||     
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 39413159 - 39413004
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  ||| ||    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
    |||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 44895236 - 44895114
Alignment:
Q  21 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 120  Q
    |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||    
T  44895236 aagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatgg 44895137  T
Q  121 attgcatacttattttgatgaag 143  Q
    ||||  ||||| ||| |||||||    
T  44895136 attgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 39380629 - 39380496
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| ||    
T  39380629 gagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaat 39380530  T
Q  115 ttatggattgcatacttattttgatgaagatgaa 148  Q
    ||||||||||| ||||| ||| ||||||||||||    
T  39380529 ttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  24 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 123  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  124 gcatacttattttgatgaagatgaagt 150  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 39421313 - 39421161
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||||      
T  39421313 gaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatttacc 39421217  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
     ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421216 aattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  21 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 120  Q
    ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||      
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  121 attgcatacttattttgatgaagatgaagt 150  Q
    ||||| |  ||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  47 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 146  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  147 aagtcataaagctttttgga 166  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 44730162 - 44730298
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtc 151  Q
    |||| |||||| |||||| ||||||| ||||||||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 44950030 - 44949869
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 176  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 45343012 - 45343170
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| |||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 173  Q
    | ||| ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 176  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 33562341 - 33562496
Alignment:
Q  20 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 119  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||||||     
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  120 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 175  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 6010 - 5849
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 176  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 19808950 - 19809083
Alignment:
Q  15 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 114  Q
    |||| ||| ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |    
T  19808950 gagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagt 19809046  T
Q  115 ttatggattgcatacttattttgatgaagatgaagtc 151  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19809047 ttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 16114420 - 16114477
Alignment:
Q  21 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 78  Q
    ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114420 aagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University