View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_43 (Length: 414)
Name: NF10049A_low_43
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_43 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 414
Target Start/End: Original strand, 4322516 - 4322917
Alignment:
| Q |
13 |
aatattcaaaatcaaaatatcgaattaatccttttatttagcagaaaaaatttgattaattcttatcaaacaagtaaaatgtacatgcaacgatgaagct |
112 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4322516 |
aatattcaaaatcagaatatcgaattaatccttttatttagcagaattttttttattaattcttatcaaacaagtaaaatgtacatgcaacgcataagct |
4322615 |
T |
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| Q |
113 |
ttatttaattaagatatatgaagaaaatatacgtgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtcttcttgtctttagccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4322616 |
ttatttaattaagatatatgaagaaaatatacttgaccttatatcctctttcaatgtatttgatagcaacaagttctcctgtctttttgtctttagccaa |
4322715 |
T |
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| Q |
213 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaagtgacgatcca |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4322716 |
cctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatctttcctcctccatttcacagtccaaataatactgttcaattgacgatcca |
4322815 |
T |
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| Q |
313 |
atgataaaaatgaatgaaaaataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
412 |
Q |
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| T |
4322816 |
atgataaaaatgaataaaacataagtgatttagtcaaaactgaaataacattgtaatgaaaatgagaaggagaaaaatgtgaattagaaattagacaaag |
4322915 |
T |
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| Q |
413 |
aa |
414 |
Q |
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| T |
4322916 |
aa |
4322917 |
T |
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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 266
Target Start/End: Complemental strand, 41124498 - 41124398
Alignment:
| Q |
166 |
atgtatttgatagcaacaagttctcctgtcttcttgtctttagccaacctagtcactccaaagtttccagaaccaaggtccttcaatatctcgtatcttt |
265 |
Q |
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|||||||||| |||||||||||| || || || ||||||||||||||||||| || ||||| |||||||||||||| ||||||||| ||| ||||||| |
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| T |
41124498 |
atgtatttgagagcaacaagttccccagtatttttgtctttagccaacctagcaacaccaaaatttccagaaccaagttccttcaatggctcatatcttt |
41124399 |
T |
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| Q |
266 |
c |
266 |
Q |
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| T |
41124398 |
c |
41124398 |
T |
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