View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| ||||||||||||||||
Alignment Overview
Query: NF10049A_low_435 (Length: 201)
Name: NF10049A_low_435
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| |||||
| ||||||
| ||||||
Alignment Details
Target: chr1 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 43285430 - 43285539
Alignment:
| Q | 74 | acatgggggtggcagtgaggcctcacgtgggtatatctgacaccaaggcatgtttttctaccttaccctcttttccttctttcc-tcctcgttttacctt | 172 | Q |
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||
| T | 43285430 | acatgggggtggcagtgaggcctcacgtgggtatatctgacaccaaggcatgtttttctaccttaccctcttttccttctttccttcctcgttttacctt | 43285529 | T |
 | ||||
| Q | 173 | tccattcatc | 182 | Q |
| |||||||||| | ||||
| T | 43285530 | tccattcatc | 43285539 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 1250128 - 1250209
Alignment:
| Q | 102 | gggtatatctgacaccaaggcatgtttttctaccttaccctcttttccttctttcc-tcctcgttttacctttccattcatc | 182 | Q |
| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||
| T | 1250128 | gggtttatctgacaccaaggcatgtttttctatcttaccctcttttccttctttccttcctcgttttacctttccatccatc | 1250209 | T |
| ||||
Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University