View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_44 (Length: 413)
Name: NF10049A_low_44
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 33164033 - 33163637
Alignment:
| Q |
19 |
acaatctatataaatcttgaacaaataccctcaacactcctaattggtttttgattctttaacctaccaaatttaagcctaataaatttccctcttgaga |
118 |
Q |
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| T |
33164033 |
acaatctatataaatcttgaacaaataccctcaacactcctaattggtttttgattctttaacctaccaaatttaagcctaataaatttcactcttgaga |
33163934 |
T |
|
| Q |
119 |
tattttatcattctcttttaattactcccgtcatttatgtgtctcttttaattttcggtataggactatcaacctacccaacaaagtatctttacctata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33163933 |
tattttatcattctcttttaattactcccgtcatttatgtgtctcttttaattttcggtatagtactatcaacctacccaacaaagtatctttacctata |
33163834 |
T |
|
| Q |
219 |
tattcacccaattagacctcaacatatactcttatataaacacgttgaggggtttgaaatttctagcaagagagaaagagaaaagaaagcctttaaccat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33163833 |
tattcacccaattagacctcaacatatactcttatataaacacgttgaggggtttgaaatttctagcaagagagaaagagaaaagaaagcctttaaccat |
33163734 |
T |
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| Q |
319 |
catcatca---tcatgataataaatcaaggtgacaaagaagatcaaacgaacacgttcaacaaatatgcttttgcttgtgccatagttgcttcaatg |
412 |
Q |
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| T |
33163733 |
catcatcatcatcatgataataaatcaaggtgacaaagaagatcaaacgaacacgttcaacaaatatgcttttgcttgtgccatagttgcttcaatg |
33163637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 31990003 - 31989963
Alignment:
| Q |
372 |
tcaacaaatatgcttttgcttgtgccatagttgcttcaatg |
412 |
Q |
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| T |
31990003 |
tcaacaaatatgcttttgcttgtgccattgttgcttcaatg |
31989963 |
T |
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