View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_45 (Length: 411)
Name: NF10049A_low_45
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_45 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 48192117 - 48191714
Alignment:
| Q |
1 |
tatagtccaagtcccaattcaacatcatcatcgtcgacagcatcttcatctgattcaatgaatgtggagaattttcgcaatgctttatggagtttatcac |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48192117 |
tatagtccaagtcccagttcaacatcatcatcgtcgacagcatcttcatctgattcaatgaatgtggagaattttctcaatgctttatggagtttatcac |
48192018 |
T |
|
| Q |
101 |
cgaaagtcatggttgtaaccgaacaggactcaaatctaaacagttcgactctgatggagagactacttgaagctctatgttcttatgcagcattatttga |
200 |
Q |
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| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48192017 |
caaaagtcatggttgtaacggaacaggactcgaatcaaaacagttcgactctgatggagagactacttgaagctctatgttcttatgcagcattatttga |
48191918 |
T |
|
| Q |
201 |
ttgtttggaatcaactgcatcaagaacaatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactc |
300 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48191917 |
ttgtttggaatcaactgtatcaagaacaatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactc |
48191818 |
T |
|
| Q |
301 |
attttgttctttatgaactcatatactcttacctgtgtatggcacttgaaagtatatgagctgtttttctcattttacttgctcaatgtaatcatttatc |
400 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48191817 |
a-tttgttctttatgaactcatatactcttacctgtgtatggcacttgaatgtatatgagctgtttttctcattttacttgctcaatgtaatcatttatc |
48191719 |
T |
|
| Q |
401 |
ttgga |
405 |
Q |
| |
|
||||| |
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|
| T |
48191718 |
ttgga |
48191714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 23910175 - 23910074
Alignment:
| Q |
228 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatact |
327 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||| |
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| T |
23910175 |
aatatggtaatgagtattcgtttcatcattgtcaatttagagatacttttattttcctacttgactgctactcattttgttcttcatgaactcctatact |
23910076 |
T |
|
| Q |
328 |
ct |
329 |
Q |
| |
|
|| |
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|
| T |
23910075 |
ct |
23910074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 34266328 - 34266247
Alignment:
| Q |
248 |
tttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatactct |
329 |
Q |
| |
|
||||||||||||| ||||| | |||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||| |
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|
| T |
34266328 |
tttcatcattgtcgatttacatatacttttattttcctacttgactactactcattttgttcttcatgaactcatatactct |
34266247 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2085913 - 2085686
Alignment:
| Q |
1 |
tatagtccaagtcccaattcaacatcatcatcgtcgacagcatcttcatctgattcaatgaatgtggagaattttcgcaatgctttatggagtttatcac |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |||| |
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|
| T |
2085913 |
tatagtccaagtcccgattcaacatcatcgtcgtcgccagcatcttcatctgcttcaatgaatgtggagagttttctcaatgctttatggagtttgtcac |
2085814 |
T |
|
| Q |
101 |
cgaaagtcatggttgtaaccgaacaggactcaaatctaaacagttcgactctgatggagagactacttgaagctctatgttcttatgcagcattatttga |
200 |
Q |
| |
|
| |||||||||||||| |||||||||||||| |||| || ||||||||||||||||||| || ||||||||||||| ||||||||||||||| ||||| |
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|
| T |
2085813 |
caaaagtcatggttgttaccgaacaggactcgaatcataatggttcgactctgatggagaggctgcttgaagctctatattcttatgcagcattgtttga |
2085714 |
T |
|
| Q |
201 |
ttgtttggaatcaactgcatcaagaaca |
228 |
Q |
| |
|
||||||||||||||||| ||||||||| |
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|
| T |
2085713 |
ttgtttggaatcaactgtgtcaagaaca |
2085686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 227 - 405
Target Start/End: Complemental strand, 2085244 - 2085073
Alignment:
| Q |
227 |
caatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatac |
326 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||||| |
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|
| T |
2085244 |
caatatggtaatgagtattcat-----cattgtcaatttagagatacttttattttcctacttgactgctactcattttgttcttcatgaactcctatac |
2085150 |
T |
|
| Q |
327 |
tcttacctgtgtatggcacttgaaagtatatgagctgtttttctcattttacttgctcaatgtaatcatttatcttgga |
405 |
Q |
| |
|
||| ||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2085149 |
tctaacc--tgtatggtacttgaatgtatatgagctatttttctcattttacttgctcaatgtaatcatttatcttgga |
2085073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 38041950 - 38041849
Alignment:
| Q |
228 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatact |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||| |||||| |
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|
| T |
38041950 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcctacttgactactactcattttgttcttcatgaactcctatact |
38041851 |
T |
|
| Q |
328 |
ct |
329 |
Q |
| |
|
|| |
|
|
| T |
38041850 |
ct |
38041849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 2367307 - 2367209
Alignment:
| Q |
231 |
atggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatactct |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| |||||| |||||||| |||||||| |||||||| |
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|
| T |
2367307 |
atggtaatgagtattcatttcatcattgtcaatttagatatacttttattttcctacttgattgctactcatcttgttcttcatgaactcctatactct |
2367209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 1691886 - 1691785
Alignment:
| Q |
228 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatact |
327 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
1691886 |
aatatggtaatgagtattcgtttcatcattgtcaatttagagatacttttattttcctacttgactgctactcattttgttcttcatgaactcctatact |
1691787 |
T |
|
| Q |
328 |
ct |
329 |
Q |
| |
|
|| |
|
|
| T |
1691786 |
ct |
1691785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 228 - 329
Target Start/End: Complemental strand, 22759513 - 22759412
Alignment:
| Q |
228 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatact |
327 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
22759513 |
aatatggtaatgagtattcatatcatcattgtcaatttagagatactttttttttcccacttgactgctactcattttgttcttcatgaactcctatact |
22759414 |
T |
|
| Q |
328 |
ct |
329 |
Q |
| |
|
|| |
|
|
| T |
22759413 |
ct |
22759412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 248 - 329
Target Start/End: Original strand, 33297851 - 33297932
Alignment:
| Q |
248 |
tttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaactcatatactct |
329 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
33297851 |
tttcatcattgtcaatttacagatacttttattttcctacttgactgctactcattttgttcttcatgaactcctatactct |
33297932 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 77323 - 77389
Alignment:
| Q |
228 |
aatatggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactg |
294 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
77323 |
aatatgatactgagtattcatttcatcattgtcaatttagagatacttttattttcctacttgactg |
77389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 319
Target Start/End: Complemental strand, 42299248 - 42299162
Alignment:
| Q |
233 |
ggtaatgagtattcatttcatcattgtcaatttagagatacttttattttcgtacttgactgcgactcattttgttctttatgaact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||| | ||||||||||||||| ||||||| |
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|
| T |
42299248 |
ggtaatgagtattcatttcatcattgtcaatttaaagatacttttatttttctgctggactcctactcattttgttcttcatgaact |
42299162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 215
Target Start/End: Original strand, 29140667 - 29140809
Alignment:
| Q |
73 |
tttcgcaatgctttatggagtttatcaccgaaagtcatggttgtaaccgaacaggactcaaatctaaacagttcgactctgatggagagactacttgaag |
172 |
Q |
| |
|
|||| |||||| || |||||||||||||| || || ||||||||||| ||||| ||||| |||| || | || | | | ||| || ||||| |||| |
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|
| T |
29140667 |
tttctcaatgcattgtggagtttatcaccaaaggtgatggttgtaacagaacaagactctaatcataatggctcacattttacggacaggctactggaag |
29140766 |
T |
|
| Q |
173 |
ctctatgttcttatgcagcattatttgattgtttggaatcaac |
215 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
29140767 |
ctctacactcttatgcagcactatttgattgtttggaatcaac |
29140809 |
T |
|
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