View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_46 (Length: 411)
Name: NF10049A_low_46
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 4968748 - 4969162
Alignment:
| Q |
4 |
gtagaagcagagagatgactgagagagagaaa-gaaatatatatcattctgacggggtaacgtaacatcattcatccgacgattcaaataacttgtccat |
102 |
Q |
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| T |
4968748 |
gtagaagcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccat |
4968847 |
T |
|
| Q |
103 |
cgtgagagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaattt |
192 |
Q |
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| T |
4968848 |
cgtgagagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaattt |
4968947 |
T |
|
| Q |
193 |
caattcctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttca |
292 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4968948 |
caattcctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttca |
4969047 |
T |
|
| Q |
293 |
gattatc--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcg |
390 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4969048 |
gattatcagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcg |
4969147 |
T |
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| Q |
391 |
agatcaaagaacaac |
405 |
Q |
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| T |
4969148 |
agatcaaagaacaac |
4969162 |
T |
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