View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_47 (Length: 409)
Name: NF10049A_low_47
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_47 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 82 - 390
Target Start/End: Original strand, 17604803 - 17605114
Alignment:
| Q |
82 |
aggtgacttcccgatcaagaatgataaataaaatggaaacaagataaaatcgtatatcaaaacgacttctgacatcatcaaaaggatcgaaacaacattt |
181 |
Q |
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| T |
17604803 |
aggtgacttcccgatcaagaatgataaatgaaatggaaacatgataaattcgtatatcaaaacgactttcgacatcatcaaaaggatcagaaccacattt |
17604902 |
T |
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| Q |
182 |
gtaggccgacaannnnnnncgataggttgaacttttggaagcaaagggaaaaggaaaaccgagcaagatcaaagaaactgtttagaagggcagtgcaaag |
281 |
Q |
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| T |
17604903 |
gtaggccgacaatttttttggataggttgaacttttggaagcaaagggaaaaggaaaactgagcaagatcaaagaaactgtttagaagggcagtgcaaag |
17605002 |
T |
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| Q |
282 |
cattcagataaacaaagggcactgatctaactgatttagaaagatggaacgaagtgga---aacattttaaataaagctttctggtacataattcattgc |
378 |
Q |
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| T |
17605003 |
cattcagataaacaaagggcactgatctaacttatttagaaagatggaacagagaggaaacaacatgttaaataaagctttttggtacataattcgttgt |
17605102 |
T |
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| Q |
379 |
tattgtacttga |
390 |
Q |
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|||||||||||| |
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| T |
17605103 |
tattgtacttga |
17605114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 17604751 - 17604807
Alignment:
| Q |
7 |
tcaataaaaaggccttcataaaccaagatccaaacagatcaatcttgttgcaaggtg |
63 |
Q |
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| T |
17604751 |
tcaataaaaaggccttcataaaccaagatccaaacagatgaatcttgttgcgaggtg |
17604807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 260
Target Start/End: Original strand, 14992 - 15245
Alignment:
| Q |
7 |
tcaataaaaaggccttcataaaccaagatccaaacagatcaatcttgttgcaaggtgctgcccaatgaaaggaaaaggtgacttcccgatcaagaatgat |
106 |
Q |
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| T |
14992 |
tcaataaaaaggccatcatagaccaagatccaaacggatcaatcttgttgggaggtactgcccaaggaaaggaaaaggtgacttccggatcaggaataat |
15091 |
T |
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| Q |
107 |
aaataaaatggaaacaagataaaatcgtatatcaaaacgacttctgacatcatcaaaaggatcgaaacaacatttgtaggccgacaannnnnnncgatag |
206 |
Q |
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| T |
15092 |
aaataaaatggaaacaagataaaatcgtatatcgaaacgacttctggcatcaccgaaaggatcgaaaccacattcgtaggccgacaatttttctggatag |
15191 |
T |
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| Q |
207 |
gttgaacttttggaagcaaagggaaaaggaaaaccgagcaagatcaaagaaact |
260 |
Q |
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| T |
15192 |
gtcgaactattggaagcaaagggaaaaggaagaccgagtaagatcaaagaaact |
15245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 20610451 - 20610265
Alignment:
| Q |
7 |
tcaataaaaaggccttcataaaccaagatccaaacagatcaatcttgttgcaaggtgctgcccaatgaaaggaaaaggtgacttcccgatcaagaatgat |
106 |
Q |
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|||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||||| ||||| |||| || |
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| T |
20610451 |
tcaataaaaaggccatcatagaccaagatccaaacggatcaatcttgttgggaggtactgcccaaggaaaggaaaaggtgacttccggatcaggaataat |
20610352 |
T |
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| Q |
107 |
aaataaaatggaaacaagataaaatcgtatatcaaaacgacttctgacatcatcaaaaggatcgaaacaacatttgtaggccgacaa |
193 |
Q |
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| T |
20610351 |
aaataaaatggaaacaagataaaatcgtatatcgaaacgacttctggcatcaccgaaaggatcgaaaccacattcgtaggccgacaa |
20610265 |
T |
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