View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_49 (Length: 402)
Name: NF10049A_low_49
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 45481354 - 45481657
Alignment:
| Q |
1 |
gctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtccaggaaagc |
100 |
Q |
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| T |
45481354 |
gctggtatgagtcttggtcttaggatggttcaacttcttacagcaacgttggctcatgcatatgattgggagttggagaatggtgtaagtccagaaaagc |
45481453 |
T |
|
| Q |
101 |
ttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcaccacatttgtacttgtaatcatc |
200 |
Q |
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| T |
45481454 |
ttaatatggatgaagcatatgggctcaccttacagagagcagtgcctattttagcccatcctcgtccaaggctttcacctcatttgtacttgtaatcatc |
45481553 |
T |
|
| Q |
201 |
atcttttcgagtttggcttaatgccccttgtcttcatccaatcatcattctattattaaaattgtggatactctcaactttttaataaagcaagaaaagt |
300 |
Q |
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| T |
45481554 |
atcttttcgagtttggcttaatgccccttgccttcatccaatcatcgttctattattaaaattgtggatactctcaactttttaataaagcaagaaaagt |
45481653 |
T |
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| Q |
301 |
ttac |
304 |
Q |
| |
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|||| |
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| T |
45481654 |
ttac |
45481657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 45481653 - 45481709
Alignment:
| Q |
342 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagaggacattttg |
398 |
Q |
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| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagaggacattttg |
45481709 |
T |
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