View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_5 (Length: 636)
Name: NF10049A_low_5
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 322 - 534
Target Start/End: Complemental strand, 19876412 - 19876199
Alignment:
| Q |
322 |
ttgtatctttatgaattaaataatcaaagcacactagctcgcgcgcacgcgcg--cacattcacaaaaaacttggcattaaatttataattcacaaaaaa |
419 |
Q |
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| T |
19876412 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgtacacattcacaaaaaacatggcattaaattgataattcacaaaaaa |
19876313 |
T |
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| Q |
420 |
cattatcactttatcaaaagataaataaataaggaatcctttgacaatacaactactttgattaatctttgtccatgcttctattgaaaaagaataaaga |
519 |
Q |
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| T |
19876312 |
cattatcactttatcaacagacaaataaataaggaatcctttggcaatacaac-actttgattaatctttgtccatgcttctattgaaaaagaataaaga |
19876214 |
T |
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| Q |
520 |
aggatgcattttatt |
534 |
Q |
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||||| ||||||||| |
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| T |
19876213 |
aggatacattttatt |
19876199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 440 - 632
Target Start/End: Original strand, 19853475 - 19853667
Alignment:
| Q |
440 |
ataaataaataaggaatcctttgacaatacaactactttgattaatctttgtccatgcttctattgaaaaagaataaagaaggatgcattttatttcaat |
539 |
Q |
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| T |
19853475 |
ataaataaataaggaatcctttgacaatacaactactttaattaatctttgttcatgcttctactgaaaaataataaagaaggatgcattttgtttgaat |
19853574 |
T |
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| Q |
540 |
atcgacacttacttgtaagagatccccaatattgacaactaaagctccataccgaggaggaacatcgaaccactaatccttgtgaagtacttg |
632 |
Q |
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| T |
19853575 |
atcgacacttacctgtaagagatccccaatgttgacaactaaagctcgatgctgaggaggaacatcgaaccactcatccttgtgaagtacttg |
19853667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 322 - 425
Target Start/End: Complemental strand, 19879428 - 19879323
Alignment:
| Q |
322 |
ttgtatctttatgaattaaataatcaaagcacactagctcgcgcgcacgcgcgcaca--ttcacaaaaaacttggcattaaatttataattcacaaaaaa |
419 |
Q |
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||||||||||||||||||| |||||||||||| | |||||| |||||| ||||||| |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
19879428 |
ttgtatctttatgaattaagtaatcaaagcacctttgctcgcacgcacgtgcgcacacattcacaaaaaacgtggcattaaattcataattcacaaaaaa |
19879329 |
T |
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| Q |
420 |
cattat |
425 |
Q |
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|||||| |
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| T |
19879328 |
cattat |
19879323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 19875954 - 19875907
Alignment:
| Q |
322 |
ttgtatctttatgaattaaataatcaaagcacactagctcgcgcgcac |
369 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
19875954 |
ttgtatctttatgaattaaataatcaacgcacacttgctcgcacgcac |
19875907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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