View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_52 (Length: 397)
Name: NF10049A_low_52
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_52 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 33030413 - 33030803
Alignment:
| Q |
7 |
tcactgaaataggaaatgtgatcctttcactttgctgaggttcaacagcacgtgcaggccgaggtgtctcgatctcttcaactctacggattaagtccaa |
106 |
Q |
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| T |
33030413 |
tcactgaaataggaaatgtgatcctttcacattgctgaggttcaacagcacgtgcaggccgaggtgtctcgatctcttcaactctacggattaagtccaa |
33030512 |
T |
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| Q |
107 |
aagcagacttacccattgtccctgttgaataggttcaactggagttacatcgggcgcatcattgtccatgcttttaaatgacttgtttccaaactccgta |
206 |
Q |
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| T |
33030513 |
aagcagactttcccattgtccctgttgaataggttcaactggagttacatcgggagcaacattttccatgtttttaaatgacttgtttccaaactccgta |
33030612 |
T |
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| Q |
207 |
gcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacatagaaaaagacttttgataactaaacaaatataaaca |
306 |
Q |
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| T |
33030613 |
gcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaactaaaatacatagaaaaagacttttgataactaaacaaatataaaca |
33030712 |
T |
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| Q |
307 |
tttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacaaaattatctagcgtcgtt |
397 |
Q |
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| T |
33030713 |
tttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacaaaattatctagtgtcgtt |
33030803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 284 - 394
Target Start/End: Original strand, 33026355 - 33026465
Alignment:
| Q |
284 |
tgataactaaacaaatataaacatttagttcctcataacagatgcatttcacacagaaatttgtctagactgacagcattgaaaacatcaccaacaaaat |
383 |
Q |
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| T |
33026355 |
tgataactaaacaaatataaccatttagatcctcataacagatgcatttcacacagaaatttgtctagactgacatcattgaaaacatcaccaacaaaat |
33026454 |
T |
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| Q |
384 |
tatctagcgtc |
394 |
Q |
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|||| |||||| |
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| T |
33026455 |
tatccagcgtc |
33026465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 332
Target Start/End: Original strand, 33015804 - 33015963
Alignment:
| Q |
172 |
ccatgcttttaaatgacttgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacata |
271 |
Q |
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| T |
33015804 |
ccatgcttttcaatgccatgtttccaaactctgtcgcaacacaaaactgcaccaatccaaatgcacaagtctaaa-atctgatcataataaaaatacaaa |
33015902 |
T |
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| Q |
272 |
gaaaaagacttttgataactaaacaaatataaacatttagttcctcataacagatgcattt |
332 |
Q |
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| T |
33015903 |
ggaaaagacttttgataaccaaacaaatacaaatatttatgtcctcataacagatgtattt |
33015963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 184 - 323
Target Start/End: Original strand, 33041321 - 33041460
Alignment:
| Q |
184 |
atgacttgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgattgtaacaaaaatacatagaaaaagacttt |
283 |
Q |
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||||| |||||||| |||| || |||||| ||||||||||||||||| | | | |||||||||||||| ||||||||||||| || ||||||| |
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| T |
33041321 |
atgacatgtttccacactctgttgcaacataaaactgcaccaatccagatgcaagcttctaaatttctgacattaacaaaaatacaaaggcaaagactcg |
33041420 |
T |
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| Q |
284 |
tgataactaaacaaatataaacatttagttcctcataaca |
323 |
Q |
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| T |
33041421 |
tgataaccagacaaatataaccatttagttactcataaca |
33041460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 33041176 - 33041222
Alignment:
| Q |
111 |
agacttacccattgtccctgttgaataggttcaactggagttacatc |
157 |
Q |
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| T |
33041176 |
agacttgcccattgtccctgttgaataggttcaattggagttacatc |
33041222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 32828831 - 32828711
Alignment:
| Q |
49 |
caacagcacgtgcaggccgaggtgtctcgatctcttcaactctacggattaagtccaaaagc------------agacttacccattgtccctgttgaat |
136 |
Q |
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| T |
32828831 |
caacagcacgagcaggccaagatgtctcactctcttcaaccctacggattatgtccaaaagcaattcaggaggtagactcgcccattgtccttgttgaat |
32828732 |
T |
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| Q |
137 |
aggttcaactggagttacatc |
157 |
Q |
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| T |
32828731 |
aggttcaattggagttacatc |
32828711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 33026016 - 33026078
Alignment:
| Q |
49 |
caacagcacgtgcaggccgaggtgtctcgatctcttcaactctacggattaagtccaaaagca |
111 |
Q |
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| T |
33026016 |
caacagcacgtgcaggccaagatgtctcactttcttcaaccttacggattatgtccaaaagca |
33026078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 32828499 - 32828451
Alignment:
| Q |
283 |
ttgataactaaacaaatataaacatttagttcctcataacagatgcatt |
331 |
Q |
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| T |
32828499 |
ttgataaccaaacaaatataaccatttagctccttataacaaatgcatt |
32828451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 33020193 - 33020269
Alignment:
| Q |
178 |
ttttaaatgacttgtttccaaactccgtagcaacacaaaactgcaccaatccaaacgtacaattctaaatttctgat |
254 |
Q |
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| T |
33020193 |
ttttcaatgacatgcttccacactgcgtcgcaacacaaaactgctccaatctaaatgcactcttctaaatttctgat |
33020269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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