View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
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Alignment Overview
Query: NF10049A_low_54 (Length: 396)
Name: NF10049A_low_54
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
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Alignment Details
Target: scaffold0007 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 211 - 384
Target Start/End: Complemental strand, 149871 - 149698
Alignment:
| Q | 211 | gtgaaggtagaagcttccattgtccactatatcttggtctttttgtggttaaggatgtttcaaattgggtttcaaaaggtgaagaacttgcaccaccact | 310 | Q |
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| T | 149871 | gtgaaggtagaagcttccattgtccactatatcttggtctttttgtggttaaggatgtttcaaattgggtttcaaaaggtgaagaacttgcaccaccact | 149772 | T |
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| Q | 311 | tgaaacatataatggagttgaaataaaagggtttgttccacttccacttacaacaatttgttgtgatgatgatg | 384 | Q |
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| T | 149771 | tgaaacatataatggagttgaaataaaagggtttgttccacttccacttacaacaatttgttgtgatgatgatg | 149698 | T |
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Target: scaffold0007; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 150062 - 149988
Alignment:
| Q | 20 | atttccttcttgacaaggcattggtgaatgatcatgagattgtgatgaagttgtctctgatgaagaagcagctaa | 94 | Q |
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| T | 150062 | atttccttcttgacaaggcattggtgaatgatcatgagattgtgatgaagttgtctctgatgaagaagcagctaa | 149988 | T |
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