View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_55 (Length: 389)

Name: NF10049A_low_55
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_55
NF10049A_low_55
[»] chr3 (30 HSPs)
chr3 (22-370)||(41985501-41985852)
chr3 (22-368)||(41980727-41981073)
chr3 (112-251)||(9494822-9494961)
chr3 (107-265)||(9407324-9407482)
chr3 (102-262)||(9425526-9425686)
chr3 (127-265)||(9343823-9343961)
chr3 (149-370)||(9448314-9448535)
chr3 (117-265)||(9329804-9329952)
chr3 (109-265)||(9617463-9617619)
chr3 (117-265)||(9336508-9336656)
chr3 (107-265)||(9397743-9397903)
chr3 (130-262)||(9655360-9655492)
chr3 (117-265)||(9695616-9695764)
chr3 (130-262)||(9646367-9646499)
chr3 (119-251)||(9352871-9353003)
chr3 (105-265)||(9432852-9433012)
chr3 (110-265)||(9416534-9416689)
chr3 (157-250)||(9340679-9340772)
chr3 (119-212)||(9377056-9377149)
chr3 (114-209)||(9614009-9614104)
chr3 (119-257)||(9626488-9626626)
chr3 (131-231)||(9441815-9441915)
chr3 (119-250)||(9347957-9348088)
chr3 (119-250)||(9369611-9369742)
chr3 (150-271)||(9756381-9756502)
chr3 (21-70)||(9695838-9695887)
chr3 (217-265)||(9686751-9686799)
chr3 (25-73)||(16011844-16011892)
chr3 (150-179)||(16011768-16011797)
chr3 (21-73)||(9395146-9395198)
[»] chr8 (3 HSPs)
chr8 (21-370)||(44688680-44689029)
chr8 (205-370)||(13170579-13170744)
chr8 (29-145)||(13170758-13170874)
[»] chr1 (8 HSPs)
chr1 (58-370)||(18991113-18991422)
chr1 (109-260)||(4428591-4428742)
chr1 (109-216)||(4439820-4439927)
chr1 (131-247)||(235195-235311)
chr1 (127-242)||(8814385-8814500)
chr1 (123-240)||(246841-246958)
chr1 (144-247)||(251412-251515)
chr1 (157-242)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (119-262)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (117-265)||(7041464-7041612)
chr6 (111-247)||(7046801-7046937)
chr6 (119-247)||(7025720-7025854)
chr6 (119-247)||(7012784-7012918)
chr6 (186-247)||(7029850-7029911)
chr6 (120-245)||(9159515-9159646)
chr6 (120-247)||(9170782-9170915)
[»] chr7 (3 HSPs)
chr7 (120-252)||(3695661-3695792)
chr7 (157-265)||(450111-450219)
chr7 (25-73)||(450315-450363)
[»] chr5 (2 HSPs)
chr5 (127-251)||(18571086-18571213)
chr5 (120-247)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 22 - 370
Target Start/End: Original strand, 41985501 - 41985852
Alignment:
Q  22 tcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaa 121  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41985501 tcaggataatcagacaaaggggaaacccaacattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgtagaatgcatcatcactaa 41985600  T
Q  122 agatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985601 agatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 41985700  T
Q  222 cttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctact 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41985701 cttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtcatatatgtctact 41985800  T
Q  322 agcaacaac---tcacgctcactctctaccaggaatttcatgtcccctccat 370  Q
    |||||||||   |||| |||||||||||||||||||||||||||||||||||    
T  41985801 agcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccat 41985852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 41980727 - 41981073
Alignment:
Q  22 tcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaa 121  Q
    ||||||||||| |||||||||||||| || | ||||||||||||||||| |||||||||||| ||||| | || ||||  |  |||||||||| ||  ||    
T  41980727 tcaggataatcggacaaaggggaaacacgaccttgatccaagtgaaaaatacacatcccacatagcattttgttaaaagggaggaatgcatcaccaacaa 41980826  T
Q  122 agatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaa 221  Q
    |||| | ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41980827 agataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtcaa 41980926  T
Q  222 cttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctact 321  Q
    |||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |||    
T  41980927 cttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtccact 41981026  T
Q  322 agcaacaactcacgctcactctctaccaggaatttcatgtcccctcc 368  Q
    ||||| || |||| |||||||||||||||||||||||  ||||||||    
T  41981027 agcaataattcaccctcactctctaccaggaatttcacatcccctcc 41981073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  112 tcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 211  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  212 aactcgccaacttgacccatttcttctccttctcatcaag 251  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 107 - 265
Target Start/End: Original strand, 9407324 - 9407482
Alignment:
Q  107 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 206  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||    
T  9407324 atgcatcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatc 9407423  T
Q  207 ccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    ||||||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407424 ccctaaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 9425526 - 9425686
Alignment:
Q  102 gttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaact 201  Q
    |||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | |||||||||||     
T  9425526 gttgtatgcatcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaacc 9425625  T
Q  202 ctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 262  Q
    |||| || |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425626 ctattccttaaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  127 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 226  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  227 cccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 370
Target Start/End: Original strand, 9448314 - 9448535
Alignment:
Q  149 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 248  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  249 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 348  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  349 aggaatttcatgtcccctccat 370  Q
    | |||||| |||||||||||||    
T  9448514 aagaattttatgtcccctccat 9448535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  117 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 216  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  217 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 9617619 - 9617463
Alignment:
Q  109 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 208  Q
    ||||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| |||||||    
T  9617619 gcatcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatccc 9617520  T
Q  209 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    ||||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617519 ctaaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  117 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 216  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  217 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 265
Target Start/End: Original strand, 9397743 - 9397903
Alignment:
Q  107 atgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatc 206  Q
    ||||||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || |||||    
T  9397743 atgcatcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatc 9397842  T
Q  207 ccctaaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 265  Q
    ||||||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397843 ccctaaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  130 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 229  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  230 atttcttctccttctcatcaagtctgaacacat 262  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 117 - 265
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  117 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 216  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  217 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 130 - 262
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  130 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 229  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  230 atttcttctccttctcatcaagtctgaacacat 262  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 218  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  219 caacttgacccatttcttctccttctcatcaag 251  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 9432852 - 9433012
Alignment:
Q  105 gaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactcta 204  Q
    |||| |||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| |||    
T  9432852 gaatacatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaacccta 9432951  T
Q  205 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    || |||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432952 tctcctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  110 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 209  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||| | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  210 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 250
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  157 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 250  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 212
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 212  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  114 atcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 209  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 218  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  219 caacttgacccatttcttctccttctcatcaagtctgaa 257  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  131 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 230  Q
    |||| |||||||||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  231 t 231  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 9347957 - 9348088
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 218  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9347957 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9348056  T
Q  219 caacttgacccatttcttctccttctcatcaa 250  Q
    |||||| ||||| |||||||||||||||||||    
T  9348057 caacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 9369611 - 9369742
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 218  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9369611 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9369710  T
Q  219 caacttgacccatttcttctccttctcatcaa 250  Q
    |||||| ||||| |||||||||||||||||||    
T  9369711 caacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 271
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  150 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 249  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  250 agtctgaacacatcaagcttta 271  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 9695887 - 9695838
Alignment:
Q  21 atcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaa 70  Q
    |||||||||| |||||||||| |||||||| | |||||||||||||||||    
T  9695887 atcaggataaccagacaaaggtgaaacccgaccttgatccaagtgaaaaa 9695838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  217 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 16011892 - 16011844
Alignment:
Q  25 ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac 73  Q
    ||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  16011892 ggataatcagacaaaggtgaaatccgaccttgatccaagtgaaaaacac 16011844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 179
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  150 caaatccgaagcagaagcagaaaacgaaca 179  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 9395146 - 9395198
Alignment:
Q  21 atcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac 73  Q
    ||||||||| ||||||| |||||||| ||| |  |||||||||||||||||||    
T  9395146 atcaggatagtcagacagaggggaaatccgaccctgatccaagtgaaaaacac 9395198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 44689029 - 44688680
Alignment:
Q  21 atcaggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcacta 120  Q
    |||||||||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||||| | |||||||| |||||| |  |||  | |     
T  44689029 atcaggataatcggacaaaggggaaactctgcgttgatccaagtgaaaaacacacatcccacaaagcatatcgtcaaaatagttgaaggattcacaagtg 44688930  T
Q  121 aagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 220  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  221 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 320  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  321 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 370  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccat 44688680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 13170744 - 13170579
Alignment:
Q  205 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 304  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  305 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccat 370  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||||||||    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccat 13170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 13170874 - 13170758
Alignment:
Q  29 aatcagacaaaggggaaacccggcattgatccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgac 128  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||    
T  13170874 aatcagataaaggggaaagccggcattgatccaagtgaaaaacacacatcccacaaagcatctcgtcaacatagtggaatgcatcatcactaaagatgac 13170775  T
Q  129 acaatttcctttgacaa 145  Q
    |||||||||||||||||    
T  13170774 acaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 18991113 - 18991422
Alignment:
Q  58 tccaagtgaaaaacacacatcccacaaagcatctggtcaaaatcgttgaatgcatcatcactaaagatgacacaatttcctttgacaacagacaaatccg 157  Q
    ||||||| ||||||||||||||||||  |||| |  ||||||  | |||| ||||| ||| |||||| ||||||||| |||||||||||||| ||||| |    
T  18991113 tccaagtcaaaaacacacatcccacatcgcatgttatcaaaagggatgaacgcatcgtcaataaagacgacacaattccctttgacaacagataaatcag 18991212  T
Q  158 aagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||  | || |   ||||| |||||   |||||| ||| || ||    
T  18991213 aagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccctaagctcttcgacct---ccattccttctttctctcattaagcctaaa 18991309  T
Q  258 cacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttc 357  Q
    ||| |  || |||| ||| | ||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||  |||| |||||||| |||||||    
T  18991310 caccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtcacagatgtccactagcaacaactcaccttcacactctaccaagaatttc 18991409  T
Q  358 atgtcccctccat 370  Q
    || ||||||||||    
T  18991410 atatcccctccat 18991422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 4428591 - 4428742
Alignment:
Q  109 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 208  Q
    ||||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| |||||||    
T  4428591 gcatcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatccc 4428690  T
Q  209 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 260  Q
    | ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428691 ccaaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 4439820 - 4439927
Alignment:
Q  109 gcatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 208  Q
    ||||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |    
T  4439820 gcatcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctc 4439919  T
Q  209 ctaaactc 216  Q
    | ||||||    
T  4439920 ccaaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 247
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  131 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 230  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  231 tttcttctccttctcat 247  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  127 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 226  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  227 cccatttcttctcctt 242  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 123 - 240
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  123 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 222  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  223 ttgacccatttcttctcc 240  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 251515 - 251412
Alignment:
Q  144 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttc 243  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||     
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttt 251416  T
Q  244 tcat 247  Q
    ||||    
T  251415 tcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  157 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 242  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 218  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  219 caacttgacccatttcttctccttctcatcaagtctgaacacat 262  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 117 - 265
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  117 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 216  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  217 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 265  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  111 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 210  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  211 aaactcgccaacttgacccatttcttctccttctcat 247  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 212  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  213 actcgccaacttgacccatttcttctccttctcat 247  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  119 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 212  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  213 actcgccaacttgacccatttcttctccttctcat 247  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  186 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 247  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  120 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 213  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  214 ctcgccaacttgacccatttcttctccttctc 245  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 9170782 - 9170915
Alignment:
Q  120 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 213  Q
    |||||||| |||||| |||| |  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9170782 aaagatgatacaattcccttgggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9170881  T
Q  214 ctcgccaacttgacccatttcttctccttctcat 247  Q
    ||||  || || ||||| ||||||||||||||||    
T  9170882 ctcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 120 - 252
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  120 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 219  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  220 aacttgacccatttcttctccttctcatcaagt 252  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  157 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 256  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  257 acacatcaa 265  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 450363 - 450315
Alignment:
Q  25 ggataatcagacaaaggggaaacccggcattgatccaagtgaaaaacac 73  Q
    |||||||||||||| || |||||||| | ||||||||||||||||||||    
T  450363 ggataatcagacaagggtgaaacccgaccttgatccaagtgaaaaacac 450315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  127 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 223  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  224 tgacccatttcttctccttctcatcaag 251  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  120 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 219  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  220 aacttgacccatttcttctccttctcat 247  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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