View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_58 (Length: 384)
Name: NF10049A_low_58
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 5 - 372
Target Start/End: Complemental strand, 45141971 - 45141604
Alignment:
| Q |
5 |
catattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgt |
104 |
Q |
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| T |
45141971 |
catattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacacgttgaacgt |
45141872 |
T |
|
| Q |
105 |
acaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
204 |
Q |
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| T |
45141871 |
acaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggcagctacactggcagtacaaattatggatccacgga |
45141772 |
T |
|
| Q |
205 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattc |
304 |
Q |
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| T |
45141771 |
tttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattc |
45141672 |
T |
|
| Q |
305 |
tagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
372 |
Q |
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| T |
45141671 |
tagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
45141604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 45152612 - 45152247
Alignment:
| Q |
9 |
ttcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaa |
108 |
Q |
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| T |
45152612 |
ttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaacaa |
45152513 |
T |
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| Q |
109 |
gtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttt |
208 |
Q |
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| |||| |||||||||||||| | ||||||||| || | | ||||||||| || |||| ||||| || || ||||||||||||||||| ||||| |
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| T |
45152512 |
ggcctataagaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccacactagccgtgcaaattatggatccacgaatttt |
45152413 |
T |
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| Q |
209 |
tctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagt |
308 |
Q |
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||| |||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
45152412 |
tctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatca----ttagt |
45152317 |
T |
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| Q |
309 |
atgctgctagaca------taccaccttcaattccagcgttgctaaacataatgtctagggttccatatt |
372 |
Q |
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|||||| |||||| || ||||| |||||||||| ||||| ||||| ||||||| ||||||||||| |
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| T |
45152316 |
atgctgatagacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttccatatt |
45152247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 38256429 - 38256127
Alignment:
| Q |
11 |
cagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtacaagt |
110 |
Q |
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||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||||| | ||| | ||||| |
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| T |
38256429 |
cagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcatgctgacctaacaagg |
38256330 |
T |
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| Q |
111 |
cctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctacactggcagtacaaattatggatccacggatttttc |
210 |
Q |
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|||| ||||||||||| || | ||||||||| || | | | | ||||| | ||||||||||||| || |||||||| ||||| || ||||||| |
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| T |
38256329 |
cctataagaccatgttttgatgctgtataatcatgtcctgcacatctaccaacaaaaccagctacactggctgtgcaaattattgatcctcgtatttttc |
38256230 |
T |
|
| Q |
211 |
tctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattctagtat |
310 |
Q |
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| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | ||||||||||||||||||||||| || | |||||||||||| |
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| T |
38256229 |
tttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcacagccatggtgttgtcaaattcatttaggttaaattctagtat |
38256130 |
T |
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| Q |
311 |
gct |
313 |
Q |
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||| |
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| T |
38256129 |
gct |
38256127 |
T |
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