View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_59 (Length: 382)
Name: NF10049A_low_59
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_59 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 22120032 - 22120401
Alignment:
| Q |
12 |
atgaacgttacaaggaggatcatacttcatgtgttgttttgatttatacttttgtttacttttcattaattaatattaactttgaatttgaaatatatga |
111 |
Q |
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| T |
22120032 |
atgaacgttacaaggaggatcatacttcatgtgttgttttgatttatacttttgtttacttttcattaattaatattaactttgaatttgaaatatatga |
22120131 |
T |
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| Q |
112 |
caggaaaataattaacaagatgttgagaagcttgtttcttgttttgttgttgatccatgcaaccttagctgcacggaaacatccacttcaaaatctacct |
211 |
Q |
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| T |
22120132 |
caggaaaataattaacaagatgttgagaagcttgtttcttgttttgttgttgatccatgcaaccttagctgcacggaaacatccacttcaaaatctacct |
22120231 |
T |
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| Q |
212 |
aagtacaaatggtcaacattaagtggttggtaataatgtcatattttctatttacacatggtttcttttttaaggttttaaatacttgtttggtagacac |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||| |
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| T |
22120232 |
aagtacaaatggtcaacattaagtggttggtaataatgtcatattttctatttccacgtggtttctttttcaaggtttt-aatacttgtttggtagacac |
22120330 |
T |
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| Q |
312 |
aatataataagaaattaatgattaataggataaaagtgtttatcccataagtacaaatgagaagggtaaaa |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22120331 |
aatataataagaaattaatgattaataggataaaagtgtttatcccataagtacaaatgagaagggtaaaa |
22120401 |
T |
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