View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_63 (Length: 377)
Name: NF10049A_low_63
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_63 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 12666798 - 12666968
Alignment:
| Q |
16 |
accaccaaatcactcttacatctcttacaatttgcattctatacttctatttgtttccttttattcctaaacctacatacctaataccaaaattcgagtt |
115 |
Q |
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| T |
12666798 |
accaccaaatcactcttacatctcttacaatttgcattctatacttctatttgtttccttttattcctaaacctacatgcctaataccaaaatttgagtt |
12666897 |
T |
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| Q |
116 |
caaaataattttgattttcattaatttatgttcaactaatattgaattgatatgaactacaattaccaaga |
186 |
Q |
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| T |
12666898 |
caaaataattttgattttcattaatttatgttcaactaatattgaattgatatgaactacaaatactaaga |
12666968 |
T |
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Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 203 - 357
Target Start/End: Original strand, 12666995 - 12667149
Alignment:
| Q |
203 |
gcataagaaactgatatttcttccaaacctttaaaacaaaatgagaatccttacactaaattatatgcatcctcctgttaggaacatcatgcatacagta |
302 |
Q |
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| T |
12666995 |
gcataagaaactgatatttcttccaaaccttgaaaacaaaatgagaatccttacactaaattatatgcatcctcctgttaggaacatcatgcatacagta |
12667094 |
T |
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| Q |
303 |
catgatcattttctacccttgtcattttaataggtagtaggtctaccacgtgtag |
357 |
Q |
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| T |
12667095 |
catgatcattttctacccttgtcattttaataggtagtaggtctaccacgtgtag |
12667149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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