View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_64 (Length: 376)
Name: NF10049A_low_64
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Complemental strand, 29056524 - 29056156
Alignment:
| Q |
3 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
102 |
Q |
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| T |
29056524 |
tagattattctcagaagctacttgaaacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggat |
29056425 |
T |
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| Q |
103 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
202 |
Q |
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| T |
29056424 |
gaaaattttgaaaagtgattttgtacaatataagctgtaacaaacaggctctttatatttgttgttggtttcattattgttttttacaaaatatgccgta |
29056325 |
T |
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| Q |
203 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagtatgttgagtggagtaag |
302 |
Q |
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| T |
29056324 |
aaaacaggctctttatatttgttattggtttcatgattgttttttcaatgcatgggtcattgatcgaagtggagaagcacagcatgttgagtggagtaag |
29056225 |
T |
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| Q |
303 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
371 |
Q |
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| T |
29056224 |
atccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctgagggtaatctt |
29056156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 360
Target Start/End: Original strand, 32848736 - 32848826
Alignment:
| Q |
270 |
agtggagaagcacagtatgttgagtggagtaagatccaaacgcctactgatgaagtggttgtaccttatgacagtttggcaccaactcctg |
360 |
Q |
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| T |
32848736 |
agtggtgaagcgcagcatgtagaatggagtaagatccagacgccaactgatgaagttgttgtgccttatgatactttggcgccaactcctg |
32848826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 2811253 - 2811322
Alignment:
| Q |
38 |
catttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatgaaaa |
107 |
Q |
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| T |
2811253 |
catttgaaacagtttttagattattttcagattctcaattttttaagaatttgtaacaaacagatgaaaa |
2811322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 21479534 - 21479629
Alignment:
| Q |
28 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaatggatg-aaaattttgaaaagtgatt |
122 |
Q |
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| T |
21479534 |
aacagcttctcatttgaagctgtttttagattttttttagattctgatttttttaaaaagctgtaacaaatggatgcaaaattcttaaaagtgatt |
21479629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 42429723 - 42429792
Alignment:
| Q |
28 |
aacagtttctcatttgaaacattttttaaattattttcagattctcatttttgtaagaatctgcaacaaa |
97 |
Q |
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| T |
42429723 |
aacagcttctcatttgaaactgtttttagattatttttagattctgatttttttaaaaagctgtaacaaa |
42429792 |
T |
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