View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_65 (Length: 375)
Name: NF10049A_low_65
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 5 - 369
Target Start/End: Complemental strand, 31784801 - 31784437
Alignment:
| Q |
5 |
gtttggtgttgtatgcgcctttttagccgtatctgcaagtaaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
104 |
Q |
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| T |
31784801 |
gtttgatgttgtatgtgcccttttagccgcatctgcgagtaaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttaga |
31784702 |
T |
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| Q |
105 |
ttaggaatgacatttattgaattgttagctacaccagtgcttttgtttctgatgtctctaaccatatgttcaacttttatcttgatacctccgcccctta |
204 |
Q |
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|||||||||| |||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
31784701 |
ttaggaatgatgtttattgaattgttaggtacaccgatgctttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgta |
31784602 |
T |
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| Q |
205 |
cactcattattctttcctcataatagttggaaggttcccttgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttac |
304 |
Q |
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| T |
31784601 |
cactcagcattctttcctcagaatagttggaaggttcccttgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgc |
31784502 |
T |
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| Q |
305 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
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| T |
31784501 |
actaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
31784437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
51 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccagtgcttttgt |
150 |
Q |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
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| Q |
151 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
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| Q |
249 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
324 |
Q |
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| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 19633725 - 19633774
Alignment:
| Q |
320 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgcttt |
369 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgcttt |
19633774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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