View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_72 (Length: 364)
Name: NF10049A_low_72
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_72 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 364
Target Start/End: Original strand, 405806 - 406159
Alignment:
| Q |
10 |
ggtgttgcagaggttttaaaggattttattgttgttggttaaaatgtagtgcgtacctaatatttaattacatgtatggctatgttactcctaatgatgt |
109 |
Q |
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| T |
405806 |
ggtgttgctgaggttttgaagaattttattgttgttagttaaattgtagtgcgtacctaatatttaattacatgtatggctatgttactcctaatgatgt |
405905 |
T |
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| Q |
110 |
gtctgccttgctggatcaacacattgccaagggagaggtcatacaaaaactatggaggtaaccacttaatgtgtgcttttgacttccacat-tacaattt |
208 |
Q |
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| T |
405906 |
gcctgccttgctggatcaacatattgccaagggagaggtcatacaaaaactatggaggtaaccacttaatgtgtgcttttgacttccacatggatatttt |
406005 |
T |
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| Q |
209 |
gtttatttg-gccatcttatatat-tatatt-gaatggacttgtcaagatgatcaatgttgaatttaattgtatgaatatgaattgtttcagaggccaaa |
305 |
Q |
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| T |
406006 |
cattagttgatcaatgttagatatcgacattagaatttgtttatcaagatgattgatgttatattttattgtatga-----aattgtttcagaggccaaa |
406100 |
T |
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| Q |
306 |
tggggccacctattgctgaagttaaggtagaaaatgacgagaagcttgctaatggaaag |
364 |
Q |
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| T |
406101 |
tggggccacctattgctgaagttaagggagaaaatgacgagaagcttgctaatggaaag |
406159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 171 - 364
Target Start/End: Complemental strand, 398185 - 398008
Alignment:
| Q |
171 |
ccacttaatgtgtgctttt-gacttccacattacaatttgtttatttggccatcttatatattatattgaatggacttgtcaagatgatcaatgttgaat |
269 |
Q |
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| T |
398185 |
ccacttaatgtgtgctttttgacttccacattacaatttgtttatttggccatcttatatattatattgaatggacttgtcaagatgatcaatgttgaat |
398086 |
T |
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| Q |
270 |
ttaattgtatgaatatgaattgtttcagaggccaaatggggccacctattgctgaagttaaggtagaaaatgacgagaagcttgctaatggaaag |
364 |
Q |
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| T |
398085 |
ttaattgtatgaatatgaatt-----------------gggccacctattgctgaagttaaggtagaaaatgacgagaagcttgctaatggaaag |
398008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 398313 - 398183
Alignment:
| Q |
8 |
ttggtgttgcagaggttttaaaggattttattgttgttggttaaaatgtagtgcgtacctaatatttaattacatgtatggctatgttactcctaatgat |
107 |
Q |
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| T |
398313 |
ttggtgttgcagaggttttaaaggattttattgttgttggttaaaatgtagtgcgtacctaatatttaattacatgtatggttatgttactcctaatgat |
398214 |
T |
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| Q |
108 |
gtgtctgccttgctggatcaacacattgcca |
138 |
Q |
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| T |
398213 |
gtgtctgccttgctggatcaacacattgcca |
398183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 69 - 176
Target Start/End: Original strand, 416947 - 417054
Alignment:
| Q |
69 |
atatttaattacatgtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgccaagggagaggtcatacaaaaactatggaggt |
168 |
Q |
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| T |
416947 |
atatttaattacaggtatggctatgttactcctaatgatgtgcctgccttgctagaccaacacattgccaagggagaggtcatacaaaaactatggaggt |
417046 |
T |
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| Q |
169 |
aaccactt |
176 |
Q |
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| T |
417047 |
gaccactt |
417054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 418401 - 418462
Alignment:
| Q |
287 |
aattgtttcagaggccaaatggggccacctattgctgaagttaaggtagaaaatgacgagaa |
348 |
Q |
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| T |
418401 |
aattgtttcagaggtcaaatggggcaacctgttgctgaacttaagggagaagatgaccagaa |
418462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 22513740 - 22513682
Alignment:
| Q |
83 |
gtatggctatgttactcctaatgatgtgtctgccttgctggatcaacacattgccaagg |
141 |
Q |
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| T |
22513740 |
gtatggctatgttactcgtaatgatgtgcttgccttgctagaccaacacattgccaagg |
22513682 |
T |
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