View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_74 (Length: 361)

Name: NF10049A_low_74
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_74
NF10049A_low_74
[»] chr3 (15 HSPs)
chr3 (162-355)||(8260709-8260902)
chr3 (162-352)||(8265675-8265866)
chr3 (162-352)||(8258602-8258796)
chr3 (7-97)||(8260554-8260644)
chr3 (168-259)||(8350129-8350220)
chr3 (35-97)||(8350014-8350076)
chr3 (162-259)||(8352867-8352964)
chr3 (38-97)||(8258478-8258537)
chr3 (38-97)||(8265551-8265610)
chr3 (168-239)||(8252975-8253046)
chr3 (23-93)||(8334002-8334073)
chr3 (56-97)||(8352761-8352802)
chr3 (164-236)||(8356436-8356508)
chr3 (42-97)||(8252867-8252922)
chr3 (164-236)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 162 - 355
Target Start/End: Original strand, 8260709 - 8260902
Alignment:
Q  162 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260709 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcacttt 8260808  T
Q  262 gaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 355  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260809 gaagagggttttctgtttatgtaagtgtggaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttatagatat 8260902  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 8265675 - 8265866
Alignment:
Q  162 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 260  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  8265675 atcataatcagaaacttgagacgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8265774  T
Q  261 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagttaacttgatctatttataga 352  Q
    ||||| ||||||  |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  8265775 tgaagtgggtttcttgtttatgtaagtgtggaaagctgaaatgatttagttgtgggttgaacttcatgtaattaacttgatccatttataga 8265866  T

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Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 162 - 352
Target Start/End: Original strand, 8258602 - 8258796
Alignment:
Q  162 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaa-agtgatttaatttgcactt 260  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||| |||| |||||||||||||||||||    
T  8258602 atcataatcagaaacttgagatgatgagtttgaagaatggccaaagcaacttaaaatggatgaaatcaaagccataaaaaaagtgatttaatttgcactt 8258701  T
Q  261 tgaagagggttttctgtttatggaagtgtgaaaagctgaaatgatttagttgtaggttgaacttcatgtagt---taacttgatctatttataga 352  Q
    ||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| |   ||||||||||||||||||||    
T  8258702 tgaagtgggttttttgtttatgtaagtgtgcaaagctgaaatgatttagttgtgggttgaacttcatgtaattaataacttgatctatttataga 8258796  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 8260554 - 8260644
Alignment:
Q  7 tgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260554 tgataagaaagtggatgcagattaatactgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 8260644  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 8350129 - 8350220
Alignment:
Q  168 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 259  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8350129 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaaaaagtgatttaatttgcact 8350220  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 8350014 - 8350076
Alignment:
Q  35 tgcatgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 97  Q
    ||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  8350014 tgcatgactacaagcgtgagggataatagttaacagggaaataagaaactataattggagctc 8350076  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 8352867 - 8352964
Alignment:
Q  162 atcataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaaaaagtgatttaatttgcact 259  Q
    |||||||||| |||||||||| |||||||   ||||| | ||||||||| | || || ||||||||||||||||||||||||||||||  ||||||||    
T  8352867 atcataatcataaacttgagaagatgagttcgaagaaggaccaaagcaattgaaaaatgatgaaatcaaagccatcaaaaagtgatttggtttgcact 8352964  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 8258478 - 8258537
Alignment:
Q  38 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 97  Q
    |||||||||||||||||||||||||||||  |||||||| | | ||||||||||||||||    
T  8258478 atgactacaaacgtgagagataagagttagtagggaaatgatatactacaattggagctc 8258537  T

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Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 8265551 - 8265610
Alignment:
Q  38 atgactacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 97  Q
    ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||||||||||    
T  8265551 atgactacaaacgagagagataagagttagcagggaaatgatatactacaattggagctc 8265610  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 8252975 - 8253046
Alignment:
Q  168 atcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccatcaa 239  Q
    ||||||||||||||| ||||||| | ||||| | ||||| ||| | ||||| ||||||||||||||||||||    
T  8252975 atcagaaacttgagaagatgagtttgaagaaggaccaaaacaattgaagaatgatgaaatcaaagccatcaa 8253046  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 8334002 - 8334073
Alignment:
Q  23 gcagattaatactgcatgactacaaacgtgagag-ataagagttaacagggaaataagaaactacaattgga 93  Q
    |||||||||||| || ||||||||| |||||| | |||| |||||||  |||||||||||||||||||||||    
T  8334002 gcagattaataccgcctgactacaagcgtgaggggataatagttaacgaggaaataagaaactacaattgga 8334073  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 8352761 - 8352802
Alignment:
Q  56 gataagagttaacagggaaataagaaactacaattggagctc 97  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352761 gataatagttaacagggaaataagaaactacaattgaagctc 8352802  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 8356436 - 8356508
Alignment:
Q  164 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 236  Q
    ||||||||||||||||||||||||||| | ||||  | ||||||||| | ||||| | | |||||||||||||    
T  8356436 cataatcagaaacttgagatgatgagtttgaagagagaccaaagcaattgaagaacggtaaaatcaaagccat 8356508  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 8252867 - 8252922
Alignment:
Q  42 ctacaaacgtgagagataagagttaacagggaaataagaaactacaattggagctc 97  Q
    |||||| ||||||||| ||  |||||||| ||||||||||||| ||||||||||||    
T  8252867 ctacaagcgtgagagacaattgttaacagagaaataagaaactgcaattggagctc 8252922  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 8360609 - 8360681
Alignment:
Q  164 cataatcagaaacttgagatgatgagtctaaagaatggccaaagcaacttaagaaggatgaaatcaaagccat 236  Q
    ||||||||||||||||||||||| ||| | ||||  | || |||||| | ||||| | |||||||||||||||    
T  8360609 cataatcagaaacttgagatgataagtttgaagagagaccgaagcaattgaagaaagctgaaatcaaagccat 8360681  T

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