View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_76 (Length: 361)
Name: NF10049A_low_76
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_76 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 14 - 355
Target Start/End: Original strand, 3202813 - 3203154
Alignment:
| Q |
14 |
agacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggcct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3202813 |
agacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggcct |
3202912 |
T |
|
| Q |
114 |
tccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3202913 |
tccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaa |
3203012 |
T |
|
| Q |
214 |
atcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203013 |
atcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgt |
3203112 |
T |
|
| Q |
314 |
ccagcattccaattatgatccctttaccttgattggaatttc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3203113 |
ccagcattccaattatgatccctttaccttgattggaatttc |
3203154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 3208794 - 3209128
Alignment:
| Q |
21 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3208794 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcg |
3208893 |
T |
|
| Q |
121 |
gccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctct |
220 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3208894 |
gccgtgctggctgtgtgagttccatggccaacatcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctct |
3208993 |
T |
|
| Q |
221 |
cccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
3208994 |
cccctgtgaattcacaatggccattccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgat |
3209093 |
T |
|
| Q |
321 |
tccaattatgatccctttaccttgattggaatttc |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3209094 |
tccaattatgatccctttaccttgattggaatttc |
3209128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 354
Target Start/End: Original strand, 3216733 - 3217075
Alignment:
| Q |
21 |
gcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcg |
120 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |||| ||||| || || || || |||||||| || || | ||| |||||||||| |
|
|
| T |
3216733 |
gcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagca |
3216832 |
T |
|
| Q |
121 |
gccgtgctggccgtgtgagttccgtggccaacataatcgtatggaagggatgaattt---------acgatgttccttgctccaatgatcttcttgttac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3216833 |
gccgtgctggccgtgtgagttccgtggccaacatcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttac |
3216932 |
T |
|
| Q |
212 |
aaatcctctcccctgtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgt |
311 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||| ||||||||| |
|
|
| T |
3216933 |
aaatcctttcccctgtgaattcacagtggccattccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgt |
3217032 |
T |
|
| Q |
312 |
gtccagcattccaattatgatccctttaccttgattggaattt |
354 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3217033 |
gtccaggattccaattatgatccctttaccgagattggaattt |
3217075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 3232106 - 3232140
Alignment:
| Q |
226 |
gtgaattcacaatggccattccattttgcaggtgg |
260 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtgg |
3232140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
227 |
tgaattcacaatggccattccattttgcaggtgg |
260 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 3221873 - 3221926
Alignment:
| Q |
226 |
gtgaattcacaatggccattccattttgcaggtggagaaggcattccctcatcg |
279 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| | |||||||| |||||| |
|
|
| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtggcggcattccttcatcg |
3221926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
227 |
tgaattcacaatggccattccattttgcaggtgg |
260 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University