View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_78 (Length: 360)
Name: NF10049A_low_78
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 1141189 - 1141526
Alignment:
| Q |
13 |
agatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattc |
112 |
Q |
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| T |
1141189 |
agatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattc |
1141288 |
T |
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| Q |
113 |
ggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgattttgcatatatttacnnnnnnnncattgatcatattcac |
212 |
Q |
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| T |
1141289 |
ggtactcaagctttggatggactgctcacatttgcaccaaagttaatgcaattcaattgattttgcatatatttacttttttttcattgatcatattcaa |
1141388 |
T |
|
| Q |
213 |
tgatttatgtaatgaattcagggacacctagaattatttagccattttcttcttcttttcggttaaggatttgtggagaaatagtctattttgtttcctt |
312 |
Q |
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| T |
1141389 |
ttatttatgtaatgaattcagggatacctagaattatttagccattttcttcttctttttggttaaggttttgtggagaaatagtctattttgtttcctt |
1141488 |
T |
|
| Q |
313 |
agtattatattctttctcaattttgtgcattcttcaca |
350 |
Q |
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| T |
1141489 |
agtattatattccttctcaattttgtgaattcttcaca |
1141526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 1137728 - 1137982
Alignment:
| Q |
13 |
agatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattc |
112 |
Q |
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| T |
1137728 |
agatgtgactattgattttttggagagattaagatttggaagcacttgtgagtacaatggaaaaacaaccaatgtttgtcatttgtttgcaaggaaattc |
1137827 |
T |
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| Q |
113 |
ggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgattttgcatatatttac----nnnnnnnncattgatcatat |
208 |
Q |
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| T |
1137828 |
ggaactcaagctttggatggattgctcacatttgccccaaagttaatgcaattcaattgattttgcatagatgtactttttttttcttcattgatcacat |
1137927 |
T |
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| Q |
209 |
tcactgatttatgtaatgaattcagggacacctagaattatttagccattttcttctt |
266 |
Q |
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||| ||||| |||||||||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
1137928 |
tcaatgattcatgtaatgaattcagggatacctaga---atttaaccattttcttctt |
1137982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 31266426 - 31266268
Alignment:
| Q |
18 |
tgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattcggtac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
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| T |
31266426 |
tgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaatcaatgtttgtcatttgtttgcaaggaaattcactcc |
31266327 |
T |
|
| Q |
118 |
tcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgatttt |
176 |
Q |
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||| ||||||||| || |||| | ||||| |||||||| ||||||||||||||||||| |
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| T |
31266326 |
tcatgctttggatagattgcttagatttgctccaaagttgatgcaattcaattgatttt |
31266268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 54474380 - 54474217
Alignment:
| Q |
13 |
agatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattc |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
54474380 |
agatgtgactaaagattttttggagaggttaaggtttggtagcagttgtgagtacaatggaaggacaaccaatgtttgccatttgtttgcaaggaaattc |
54474281 |
T |
|
| Q |
113 |
ggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgatttt |
176 |
Q |
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|| || | ||||||||| | |||||| ||||| | | |||||||||||||||||||||| |
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| T |
54474280 |
agtcctgatgctttggatagtttgctcagatttgctaaagatttaatgcaattcaattgatttt |
54474217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 48323286 - 48323126
Alignment:
| Q |
13 |
agatgtgactattgattttttggagaggttaaggtttggaagcacttgtgagtacaatggaaagacaaccaatgtttgtcatttgtttgcaaggaaattc |
112 |
Q |
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||||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||| |
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| T |
48323286 |
agatgtgactactgaatttttggagaggttgaggtttggaagcacttgtgagcacaatggaaggacatcca---tttgtcatttgtttgcaaggaagttc |
48323190 |
T |
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| Q |
113 |
ggtactcaagctttggatggactgctcacgtttgcaccaaagttaatgcaattcaattgatttt |
176 |
Q |
| |
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| |||| ||||||||| | || | | | ||| |||||||||||||||||||||||||||| |
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| T |
48323189 |
actcctcatgctttggatatattggttagatatgctccaaagttaatgcaattcaattgatttt |
48323126 |
T |
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