View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_8 (Length: 535)
Name: NF10049A_low_8
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 530
Target Start/End: Complemental strand, 7723366 - 7722857
Alignment:
| Q |
9 |
tggtgttccaagtgaaagagtacaatcaacagaagaagatgaagaattcggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggag |
108 |
Q |
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| T |
7723366 |
tggtgttccaagtgaaagagtacaatcaacagaagaagatgaagaattaggagtgaagcaatatgtttcaggttcatgatcataaggtgtagaggaggag |
7723267 |
T |
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| Q |
109 |
aataacattgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattccttgtg |
208 |
Q |
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| T |
7723266 |
aataacattgagaatgagttgttttgtccatgaaacataccacatgaacagtgtcccatcacgtgttgcccttgagatgaacgatgcatcattctttgtg |
7723167 |
T |
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| Q |
209 |
aaaaagagtaatggaaaatgaatgatttgaagggnnnnnnnagagtagagtagagtagagaagagggaattgttgtcttgtagtgttggaagataataaa |
308 |
Q |
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| T |
7723166 |
aaaaagagtaatggaaaatgaatgatttgaaggg----------gttttttagagtagagaagagtgaattgttgtcttgtagtgtttgaagataataaa |
7723077 |
T |
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| Q |
309 |
atgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7723076 |
atgtcgaaatactagtcagcacctgcagtccacgttgtcgtgaattgcaaatggagacatgtacatacaaatacaaaatatatatagtaaaggagataaa |
7722977 |
T |
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| Q |
409 |
attatagagcatannnnnnnnnnnnggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttct |
508 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722976 |
attataaagcata--agagagagagggacccaatgcaataaatgaaatgaagggtaagtcagggagtgagtgtgtaatgtaagcaagtgtttgagtttct |
7722879 |
T |
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| Q |
509 |
attatatctctgcagaattact |
530 |
Q |
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| T |
7722878 |
attatatctctgcagaattact |
7722857 |
T |
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