View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_81 (Length: 351)
Name: NF10049A_low_81
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 345
Target Start/End: Complemental strand, 50222286 - 50221949
Alignment:
| Q |
8 |
ccctccacatccagtcattgaaatggcctccatccgatcctcctctcataactagtacttattcctgttttatttacacatacctaaattacatacgacg |
107 |
Q |
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||||||||||||||||| |||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50222286 |
ccctccacatccagtcactgaactgtcctccatccgatccacctcttataactagtacttattcatgttttatttacacatacctaaattacatacgacg |
50222187 |
T |
|
| Q |
108 |
agattctatcatctttttataatacaagataccttcgacattctctcaaatggatttatttctagtcctattgtgtcttctataaccaccacaaatcgta |
207 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50222186 |
agattctatcatctttttataatacaatataccttcgactttctctcaaatggatttatttctagtcctattgtgtcttctataaccaccacaaatcgta |
50222087 |
T |
|
| Q |
208 |
gtatcattttcatctctagaacatcgagtttacattttgttgaaactttaactttcagttgtattcaacaaatgaaagagttgcaaccatgcagttgagt |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
50222086 |
gtatcattttcatctccagaacatcgagtttacattttgttgaaactttaactttcagttgtattcagcaaatgaaagagttgcaaccatgcagttgagt |
50221987 |
T |
|
| Q |
308 |
ttttcattaaaaagaccttaagcatttattcatctcag |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
50221986 |
ttttcattaaaaagaccttaagcatttattcatttcag |
50221949 |
T |
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