View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_83 (Length: 351)
Name: NF10049A_low_83
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 48290561 - 48290906
Alignment:
| Q |
1 |
atgaatgagctaacgttgatgaaagcaaatacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaaaaag |
100 |
Q |
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| T |
48290561 |
atgaatgagctaacgttgatgaaagcaattacagtggttgatgttatcaattaaatgaaatgaaatgccctaaaagtttagacattatcaaccaaaaaag |
48290660 |
T |
|
| Q |
101 |
gcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcatgtc |
200 |
Q |
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| T |
48290661 |
gcagtagtgttggctaattgtgatttttgcaagctaagctataatcaatttactattaattataactagattaaagatgctacatctctttcttcatgtc |
48290760 |
T |
|
| Q |
201 |
cctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttcttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48290761 |
cctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacctctttaattttctgttttctcaaaccttcttc |
48290860 |
T |
|
| Q |
301 |
acatttaattaatttcatcaattttggccaataaaaggagagaaat |
346 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48290861 |
acatttaattaatttcatcaattttgaccaataaaaggagagaaat |
48290906 |
T |
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