View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049A_low_89 (Length: 345)
Name: NF10049A_low_89
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_89 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 189 - 339
Target Start/End: Complemental strand, 7246474 - 7246324
Alignment:
| Q |
189 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246474 |
tctccttgaacaacaacagcagcagcataaactcaccttcttctttccctttctctacttcatccatggcttgtcatgatcagtcacaatctttttcaca |
7246375 |
T |
|
| Q |
289 |
atcctatcaaaactcttctttaaacccttactattactctcaatcaattac |
339 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246374 |
atcctaccaaaactcttctttaaacccttactattactctcaatcaattac |
7246324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 7246652 - 7246532
Alignment:
| Q |
11 |
acagatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7246652 |
acagatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctg |
7246553 |
T |
|
| Q |
111 |
tggaactagtagtttcttctt |
131 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7246552 |
tggaactagtagtttcttctt |
7246532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 13137278 - 13137222
Alignment:
| Q |
59 |
aagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
115 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
13137278 |
aagtattgtgaacgtcacatgcacagaggtcgaaatcgttcaagaaagcttgtggaa |
13137222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 52051971 - 52052075
Alignment:
| Q |
11 |
acagatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctg |
110 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
52051971 |
acagatggaaagaaatggagatgttcaaaagaagcatatccagattcaaagtactgtgaaaggcacatgcatagagggaaaaaccgttcaagaaagcctg |
52052070 |
T |
|
| Q |
111 |
tggaa |
115 |
Q |
| |
|
||||| |
|
|
| T |
52052071 |
tggaa |
52052075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 18199905 - 18199801
Alignment:
| Q |
11 |
acagatggcaagaaatggagatgctcaaaggaagcatatccagactcaaagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctg |
110 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||||||||| || || || ||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
18199905 |
acagatggaaaaaaatggagatgctcaaaagaagcatatccagattctaaatactgtgaaagacacatgcatagaggaaaaaaccgttcaagaaagcctg |
18199806 |
T |
|
| Q |
111 |
tggaa |
115 |
Q |
| |
|
||||| |
|
|
| T |
18199805 |
tggaa |
18199801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 42091957 - 42092016
Alignment:
| Q |
58 |
aaagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
117 |
Q |
| |
|
|||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
42091957 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaact |
42092016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 399100 - 399189
Alignment:
| Q |
26 |
tggagatgctcaaaggaagcatatccagactcaaagtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaa |
115 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||| ||||| ||||| | ||||||||| | || | |||||||||||||||||||||||| |
|
|
| T |
399100 |
tggaggtgctcgaaggaagcatacccagactccaagtactgtgagcgccacatgcaccgtggccgcaaccgttcaagaaagcctgtggaa |
399189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 42183759 - 42183815
Alignment:
| Q |
61 |
gtattgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
117 |
Q |
| |
|
|||||||||||| || ||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
42183759 |
gtattgtgaaaggcatatgcatagaggtcgtccccgttcaagaaagcctgtggaact |
42183815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University