View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_9 (Length: 532)

Name: NF10049A_low_9
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_9
NF10049A_low_9
[»] chr3 (18 HSPs)
chr3 (49-450)||(20982647-20983058)
chr3 (23-432)||(20995548-20995962)
chr3 (461-532)||(4085098-4085169)
chr3 (265-378)||(20490987-20491100)
chr3 (389-430)||(20982795-20982836)
chr3 (391-430)||(20982187-20982226)
chr3 (290-387)||(50197010-50197107)
chr3 (393-429)||(22312204-22312240)
chr3 (391-426)||(331587-331622)
chr3 (165-244)||(20490916-20490994)
chr3 (265-338)||(20982192-20982266)
chr3 (391-429)||(22312417-22312455)
chr3 (203-243)||(11047498-11047538)
chr3 (265-297)||(22312204-22312236)
chr3 (391-439)||(30135595-30135642)
chr3 (391-439)||(30141724-30141771)
chr3 (391-439)||(30145146-30145193)
chr3 (359-387)||(50196960-50196988)
[»] chr6 (6 HSPs)
chr6 (461-532)||(8158314-8158385)
chr6 (390-430)||(6728572-6728612)
chr6 (391-430)||(11339957-11339996)
chr6 (265-310)||(10742173-10742218)
chr6 (391-434)||(10742184-10742227)
chr6 (346-378)||(27134224-27134256)
[»] chr4 (28 HSPs)
chr4 (265-387)||(23564442-23564564)
chr4 (275-379)||(2346305-2346409)
chr4 (290-385)||(8836953-8837048)
chr4 (265-388)||(9928859-9928982)
chr4 (468-532)||(18702595-18702659)
chr4 (265-380)||(36165560-36165675)
chr4 (269-335)||(23566628-23566694)
chr4 (265-355)||(19680589-19680679)
chr4 (265-387)||(36165775-36165897)
chr4 (391-434)||(23564161-23564204)
chr4 (301-376)||(54137220-54137295)
chr4 (265-387)||(53089876-53089998)
chr4 (265-357)||(23564170-23564262)
chr4 (265-309)||(41389520-41389564)
chr4 (265-336)||(36165342-36165413)
chr4 (265-307)||(36165213-36165255)
chr4 (265-299)||(37927658-37927692)
chr4 (391-451)||(1460392-1460452)
chr4 (389-429)||(9928855-9928895)
chr4 (267-387)||(18523101-18523219)
chr4 (389-429)||(36165209-36165249)
chr4 (391-426)||(18523310-18523345)
chr4 (265-299)||(18523311-18523345)
chr4 (391-429)||(37927658-37927696)
chr4 (389-426)||(41389519-41389556)
chr4 (397-426)||(55240370-55240399)
chr4 (391-423)||(2346177-2346209)
chr4 (390-426)||(53090092-53090128)
[»] chr8 (10 HSPs)
chr8 (467-532)||(44317637-44317702)
chr8 (476-521)||(43897019-43897064)
chr8 (479-532)||(44302256-44302309)
chr8 (265-335)||(13532986-13533056)
chr8 (265-335)||(13622526-13622596)
chr8 (265-379)||(42160288-42160402)
chr8 (290-338)||(12704178-12704226)
chr8 (391-426)||(42160368-42160403)
chr8 (391-428)||(27461242-27461279)
chr8 (477-518)||(44307477-44307518)
[»] chr7 (6 HSPs)
chr7 (265-381)||(5473190-5473306)
chr7 (272-378)||(8745762-8745868)
chr7 (391-451)||(5473272-5473332)
chr7 (391-430)||(23972397-23972436)
chr7 (265-335)||(35035102-35035172)
chr7 (268-321)||(33804218-33804271)
[»] chr1 (6 HSPs)
chr1 (165-260)||(3371628-3371721)
chr1 (302-387)||(30602456-30602541)
chr1 (391-430)||(30602336-30602375)
chr1 (392-431)||(39747878-39747917)
chr1 (265-299)||(30602336-30602370)
chr1 (290-326)||(10645725-10645761)
[»] scaffold0557 (2 HSPs)
scaffold0557 (265-336)||(4595-4666)
scaffold0557 (389-426)||(4630-4667)
[»] chr2 (2 HSPs)
chr2 (265-374)||(43829705-43829814)
chr2 (393-430)||(36201865-36201902)
[»] scaffold0549 (2 HSPs)
scaffold0549 (391-430)||(1056-1095)
scaffold0549 (391-430)||(3146-3185)
[»] chr5 (5 HSPs)
chr5 (391-426)||(8402229-8402264)
chr5 (265-310)||(31540324-31540369)
chr5 (390-426)||(31540323-31540359)
chr5 (165-239)||(8401993-8402065)
chr5 (265-323)||(42193350-42193408)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 49 - 450
Target Start/End: Complemental strand, 20983058 - 20982647
Alignment:
Q  49 tcaatcacaactctaaggtatttcttatttcttccannnnnnnnnnctcttttcgaaatttagctgaagaaattcctcgtttacttctattgcgcaaaat 148  Q
    |||||||||||||||||||||||||||||||| |||          |||  ||| |||||||||||||||||||||||  |||||| |||||| ||||||    
T  20983058 tcaatcacaactctaaggtatttcttatttctacca----ttttttctccgttc-aaatttagctgaagaaattcctcaattacttttattgcacaaaat 20982964  T
Q  149 aatcccgctttgtttctgttaaatgagctttgatctcattccaaaagagttacttcaaaggatgagggt--------------agtcaagcatgtttata 234  Q
    ||| ||| ||||||||||   |||||||||||||||||| |||||| |||||||||||| |||||||||              |||||| ||| ||||||    
T  20982963 aatgccgttttgtttctg---aatgagctttgatctcatcccaaaatagttacttcaaatgatgagggtaaaatgatgagggcagtcaatcatatttata 20982867  T
Q  235 cactcaacaaatcggaacctgagcaaagac-----acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggt 329  Q
    ||||| ||||  ||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  20982866 cactctacaatccggaacctgagcaaagacaaataacaaactacaaacaactttaaaactaacttcaacatccaccctcactcctagcgtgcgcctgggt 20982767  T
Q  330 ctaattcccgaaatgcaatccttaacccagctttgataccatgttaaataggtttggaagatgttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    |||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20982766 ctaattcctgcaatgcaatccttaacacagctttgata-catgttaaataggtttggaaaatgttgaagttggttttaaagttgtttgtagtttgttatt 20982668  T
Q  430 tatcctatattgcacaggttc 450  Q
    ||||||| ||||| |||||||    
T  20982667 tatcctacattgctcaggttc 20982647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 23 - 432
Target Start/End: Complemental strand, 20995962 - 20995548
Alignment:
Q  23 ctagattcattcagtccactcttacttcaatcacaactctaaggtatttcttatttcttccannnnnnnnnnctcttttcgaaatttagctgaagaaatt 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||          |||| |||||||||||||||||||||||    
T  20995962 ctagattcattcattccactcttacttcaatcacaactctaaggtatttcttatctctaccattttttttttctctgttcgaaatttagctgaagaaatt 20995863  T
Q  123 cctcgtttacttctattgcgcaaaataatcccgctttgtttctgttaaatgagctttgatctcattccaaaagagttacttcaaaggatgagggtagtca 222  Q
    ||||  ||||||||||||| ||||||||||||| |||    ||||| ||||||||||||||||||  |||||||| ||  |||||||||||| |||||||    
T  20995862 cctcaattacttctattgcacaaaataatcccgtttt----ctgttcaatgagctttgatctcatcgcaaaagagctagctcaaaggatgagcgtagtca 20995767  T
Q  223 agcatgtttatacactcaacaaatcggaa-cctgagcaa----agac-----acaaactacaaacaacttcaaaactaacttcaacatccaccctcactc 312  Q
    | ||| |||||||| |||||   |||||| |||| ||||    ||||     |||| ||| |||||||||||||||||||||||||| |||||||||| |    
T  20995766 aacatatttatacattcaacggttcggaaacctgtgcaatgtgagacgaataacaacctataaacaacttcaaaactaacttcaacacccaccctcacgc 20995667  T
Q  313 ctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgttaaataggtttggaagatgttgaagttggttttaaagtt 412  Q
    ||| |||||||| |||||||||| ||  | ||||||| ||||||  ||| | ||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  20995666 ctaacgtgggcccgggtctaatttccacattgcaatctttaaccg-gctctcatatcatgttaaataggcttggaaaatgttgaagttggttttaaagtt 20995568  T
Q  413 gtttgtagtttgttatttat 432  Q
    ||||||||||||||||||||    
T  20995567 gtttgtagtttgttatttat 20995548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 461 - 532
Target Start/End: Original strand, 4085098 - 4085169
Alignment:
Q  461 ctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 532  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4085098 ctgatcaagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaataataatgga 4085169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 378
Target Start/End: Complemental strand, 20491100 - 20490987
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    |||||||| ||| ||||||||||| |||||||| | ||||||||||  |||| |||||||||| || |||||||  | || |||| ||||||  ||| ||    
T  20491100 acaaactaaaaaaaacttcaaaaccaacttcaatacccaccctcacgtctagtgtgggcctggatccaattcccacattgtaatcattaacctggctctg 20491001  T
Q  365 ataccatgttaaat 378  Q
    ||||||||||||||    
T  20491000 ataccatgttaaat 20490987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 430
Target Start/End: Original strand, 20982795 - 20982836
Alignment:
Q  389 gatgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  20982795 gatgttgaagttagttttaaagttgtttgtagtttgttattt 20982836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 430
Target Start/End: Complemental strand, 20982226 - 20982187
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  20982226 tgttgaagttggttttaaaattgtttgtagtttgttattt 20982187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 50197107 - 50197010
Alignment:
Q  290 aacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgttaaataggtttgga 387  Q
    |||||||||| |||| ||||| ||||| ||||| ||  ||| |||| ||  | |||||||||||| ||  || |||||||||||||||||||||||||    
T  50197107 aacttcaacacccactctcacccctagtgtgggtctaagtccaatttccacattgcaatccttaatccgactatgataccatgttaaataggtttgga 50197010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 22312204 - 22312240
Alignment:
Q  393 ttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    |||||||||||||| ||||||||||||||||||||||    
T  22312204 ttgaagttggttttgaagttgtttgtagtttgttatt 22312240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 426
Target Start/End: Complemental strand, 331622 - 331587
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    ||||||||| ||||||||||||||||||||||||||    
T  331622 tgttgaagtcggttttaaagttgtttgtagtttgtt 331587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 20490994 - 20490916
Alignment:
Q  165 tgttaaatgagctttgatctcattccaaaagagttacttcaaaggatgagggtagtcaagcatgtttatacactcaacaa 244  Q
    |||||||||||||| |||||||| |||||| || ||  ||||| || ||||||| ||||| || ||||||||||||||||    
T  20490994 tgttaaatgagcttggatctcatcccaaaa-agctagctcaaaagacgagggtactcaagtatatttatacactcaacaa 20490916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 20982192 - 20982266
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatcca-ccctcactcctagcgtgggcctgggtctaattccc 338  Q
    ||||||||||||||| || ||||| |||||||||| ||| |||||||  ||||| |||||||| ||| |||||||    
T  20982192 acaaactacaaacaattttaaaaccaacttcaacacccacccctcacggctagcttgggcctgagtccaattccc 20982266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 22312417 - 22312455
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  22312417 tgttgaagttggttttaaaattatttgtagtttgttatt 22312455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 11047538 - 11047498
Alignment:
Q  203 tcaaaggatgagggtagtcaagcatgtttatacactcaaca 243  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  11047538 tcaaaggatgagggtactcaagcgtatttatacactcaaca 11047498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 22312236 - 22312204
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaa 297  Q
    |||||||||||||||||||||||| ||||||||    
T  22312236 acaaactacaaacaacttcaaaaccaacttcaa 22312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 30135642 - 30135595
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctatat 439  Q
    |||||||||||||||| || || ||||||||||||||||| ||||||||    
T  30135642 tgttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatat 30135595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 30141771 - 30141724
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctatat 439  Q
    |||||||||||||||| || || ||||||||||||||||| ||||||||    
T  30141771 tgttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatat 30141724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 30145193 - 30145146
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctatat 439  Q
    |||||||||||||||| || || ||||||||||||||||| ||||||||    
T  30145193 tgttgaagttggttttgaa-ttatttgtagtttgttatttgtcctatat 30145146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 387
Target Start/End: Complemental strand, 50196988 - 50196960
Alignment:
Q  359 gctttgataccatgttaaataggtttgga 387  Q
    |||||||||||||||||||||||||||||    
T  50196988 gctttgataccatgttaaataggtttgga 50196960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 461 - 532
Target Start/End: Complemental strand, 8158385 - 8158314
Alignment:
Q  461 ctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8158385 ctgatcaagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 8158314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 6728572 - 6728612
Alignment:
Q  390 atgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  6728572 atgttgaagttggttttaaagttgtttatagtttgttattt 6728612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 11339957 - 11339996
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  11339957 tgttgtagttggttttaaagttgtttgtagtttgttattt 11339996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Complemental strand, 10742218 - 10742173
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcac 310  Q
    ||||| |||||||||||||||||||||||||||||  |||||||||    
T  10742218 acaaaatacaaacaacttcaaaactaacttcaacactcaccctcac 10742173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 434
Target Start/End: Original strand, 10742184 - 10742227
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcc 434  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||    
T  10742184 tgttgaagttagttttgaagttgtttgtattttgttatttatcc 10742227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 27134256 - 27134224
Alignment:
Q  346 aatccttaacccagctttgataccatgttaaat 378  Q
    |||||||||| ||||||||||||||||||||||    
T  27134256 aatccttaactcagctttgataccatgttaaat 27134224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 23564442 - 23564564
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||| |||| ||||||  | |  |||| ||||||  ||| ||    
T  23564442 acaaactacaaacaacttcaaaattaacttccacacccaccctcacgcctagcgtgggcctgagtctgattcccacattataatctttaaccaggctctg 23564541  T
Q  365 ataccatgttaaataggtttgga 387  Q
    |||||||||||||||||||||||    
T  23564542 ataccatgttaaataggtttgga 23564564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 379
Target Start/End: Complemental strand, 2346409 - 2346305
Alignment:
Q  275 aacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgtt 374  Q
    |||||||||||||| |||||||||| |||||||||| |||||| |||| ||||||| |||||||  |  ||||||||||||||  |||||||||||||||    
T  2346409 aacaacttcaaaacaaacttcaacacccaccctcacacctagcatgggtctgggtccaattcccacatcgcaatccttaacccgcctttgataccatgtt 2346310  T
Q  375 aaata 379  Q
    |||||    
T  2346309 aaata 2346305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 290 - 385
Target Start/End: Original strand, 8836953 - 8837048
Alignment:
Q  290 aacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgttaaataggtttg 385  Q
    |||||||||||||||||||||  |||||||||  |||| |  |||||||| | |||||||||||||||| || |||||||||||||||||||||||    
T  8836953 aacttcaacatccaccctcacgtctagcgtggttctggtttcaattcccgcattgcaatccttaacccaactgtgataccatgttaaataggtttg 8837048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 265 - 388
Target Start/End: Original strand, 9928859 - 9928982
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||   |  | ||| |||||||  | | ||||| |||| ||| |||||    
T  9928859 acaaactacaaacaacttcaaaactaacttcaacatccatcctcacgcctaacgtatactcgagtccaattccctcattacaatctttaaaccaactttg 9928958  T
Q  365 ataccatgttaaataggtttggaa 388  Q
    ||||||||||||||||| ||||||    
T  9928959 ataccatgttaaataggcttggaa 9928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 468 - 532
Target Start/End: Original strand, 18702595 - 18702659
Alignment:
Q  468 agatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 532  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  18702595 agatcgtcaataaatataagcctaggaagttgaaatcttgtcatttgttgatccatagtaatgga 18702659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 380
Target Start/End: Original strand, 36165560 - 36165675
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    ||||| ||||||||||||||||||||||||||||| |||| || |  ||||||||| ||||| |||||||||||  | ||||||| ||| | ||||| |     
T  36165560 acaaattacaaacaacttcaaaactaacttcaacacccactcttatgcctagcgtgagcctgagtctaattcccacattgcaatctttatctcagctcta 36165659  T
Q  365 ataccatgttaaatag 380  Q
    |||||||||| |||||    
T  36165660 ataccatgtttaatag 36165675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 269 - 335
Target Start/End: Original strand, 23566628 - 23566694
Alignment:
Q  269 actacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaatt 335  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  23566628 actacagacaacttcaaaaccaacttcaacatccaccctcacgcctagcgtgggcctgagtccaatt 23566694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 19680589 - 19680679
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaac 355  Q
    |||||||||||| ||||| ||||| ||||| |||| |||||||||| |||||||||||||| |||| |||||||  |  ||||||||||||    
T  19680589 acaaactacaaataactttaaaaccaactttaacacccaccctcacgcctagcgtgggccttggtcgaattcccacatcgcaatccttaac 19680679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 36165775 - 36165897
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    |||||||||||||||||||||||| | |||||||  |||||||||| ||||||||||| | ||||| |||| ||  | | |||| |||||||| |||  |    
T  36165775 acaaactacaaacaacttcaaaacaaccttcaacgcccaccctcacgcctagcgtgggtccgggtccaatttccacattacaattcttaacccggctccg 36165874  T
Q  365 ataccatgttaaataggtttgga 387  Q
    ||||||| ||||||  |||||||    
T  36165875 ataccatattaaatgagtttgga 36165897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 23564204 - 23564161
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcc 434  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  23564204 tgttgaagttggttttaaagttgattgtagtttgttatttatcc 23564161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 54137220 - 54137295
Alignment:
Q  301 ccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgttaa 376  Q
    |||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||||  || ||||||||||||||    
T  54137220 ccaccctcacgcctagagtgggcctgggtctaattctcacattgcaatccttaacccgactctgataccatgttaa 54137295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 53089876 - 53089998
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    ||||||||||  |||||||||||||| ||||||||  |||||||||  |||||||||||||||| | ||||| |  | | ||||| |||| ||| ||  |    
T  53089876 acaaactacatgcaacttcaaaactaccttcaacacacaccctcacctctagcgtgggcctgggcccaattctcacattacaatctttaatccaactccg 53089975  T
Q  365 ataccatgttaaataggtttgga 387  Q
    ||| ||||||||||||| |||||    
T  53089976 atatcatgttaaataggcttgga 53089998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 357
Target Start/End: Original strand, 23564170 - 23564262
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaaccc 357  Q
    ||||||||||| |||||| ||||| ||||||||||  |||||||||  ||||||||||  |||||| ||||||  || |||||||| ||||||    
T  23564170 acaaactacaatcaactttaaaaccaacttcaacactcaccctcacatctagcgtgggattgggtccaattccaaaactgcaatccataaccc 23564262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 41389520 - 41389564
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctca 309  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||    
T  41389520 acaaaatacaaacaacttcaaaaccaacttcaacatccaccctca 41389564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 36165342 - 36165413
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattc 336  Q
    |||||||| ||||||||| ||||  |||||||||| |||||||||| |||||||||||| || ||| |||||    
T  36165342 acaaactaaaaacaactttaaaatcaacttcaacacccaccctcacgcctagcgtgggcttgagtccaattc 36165413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 36165213 - 36165255
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccct 307  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  36165213 acaaactacaaacaatttcaaaaccaacttcaacatccaccct 36165255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 37927692 - 37927658
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaaca 299  Q
    |||||||||||||||||||||||||||||||||||    
T  37927692 acaaactacaaacaacttcaaaactaacttcaaca 37927658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 1460392 - 1460452
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctatattgcacaggttct 451  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||  | ||||| ||||||||    
T  1460392 tgttcaagttggttttgaagttgtttgtagtttgttatttgtctcacattgctcaggttct 1460452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 9928895 - 9928855
Alignment:
Q  389 gatgttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  9928895 gatgttgaagttagttttgaagttgtttgtagtttgttatt 9928855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 387
Target Start/End: Original strand, 18523101 - 18523219
Alignment:
Q  267 aaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgat 366  Q
    |||||||| |||||||||||||  ||||||||||||| |||||| ||||  || |||||||||| ||||||   | |||||| |||||||| ||| ||||    
T  18523101 aaactacatacaacttcaaaac-cacttcaacatccagcctcacgcctaaagt-ggcctgggtccaattccaacattgcaattcttaacccggctctgat 18523198  T
Q  367 accatgttaaataggtttgga 387  Q
    ||  ||| ||||||| |||||    
T  18523199 actctgtgaaataggcttgga 18523219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 429
Target Start/End: Complemental strand, 36165249 - 36165209
Alignment:
Q  389 gatgttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  36165249 gatgttgaagttggttttgaaattgtttgtagtttgttatt 36165209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 426
Target Start/End: Complemental strand, 18523345 - 18523310
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    |||||||||||||||| |||||||||||||||||||    
T  18523345 tgttgaagttggttttgaagttgtttgtagtttgtt 18523310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 299
Target Start/End: Original strand, 18523311 - 18523345
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaaca 299  Q
    |||||||||||||||||||||||| ||||||||||    
T  18523311 acaaactacaaacaacttcaaaaccaacttcaaca 18523345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 37927658 - 37927696
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatt 429  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  37927658 tgttgaagttagttttgaagttgtttgtagtttgttatt 37927696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 426
Target Start/End: Complemental strand, 41389556 - 41389519
Alignment:
Q  389 gatgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  41389556 gatgttgaagttggttttgaagttgtttgtattttgtt 41389519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 55240370 - 55240399
Alignment:
Q  397 agttggttttaaagttgtttgtagtttgtt 426  Q
    ||||||||||||||||||||||||||||||    
T  55240370 agttggttttaaagttgtttgtagtttgtt 55240399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 423
Target Start/End: Original strand, 2346177 - 2346209
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagttt 423  Q
    |||| ||||||||||||||||||||||||||||    
T  2346177 tgttcaagttggttttaaagttgtttgtagttt 2346209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 53090128 - 53090092
Alignment:
Q  390 atgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    |||||||||||| |||| |||||||||||||||||||    
T  53090128 atgttgaagttgattttgaagttgtttgtagtttgtt 53090092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 44317637 - 44317702
Alignment:
Q  467 aagatcgtggataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 532  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44317637 aagatcgtcaataaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 44317702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 521
Target Start/End: Original strand, 43897019 - 43897064
Alignment:
Q  476 gataaatataagccttggaagttgaaatcttgtcatttgttgatca 521  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  43897019 gataaatataagccttggaaattgaaatcttgtcatttgttgatca 43897064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 479 - 532
Target Start/End: Original strand, 44302256 - 44302309
Alignment:
Q  479 aaatataagccttggaagttgaaatcttgtcatttgttgatcaatagtaatgga 532  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  44302256 aaatataagccttggaaattgaaatcttgtcatttgttgataaatagcaatgga 44302309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 13532986 - 13533056
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaatt 335  Q
    |||||| ||| ||||||||||||||||||| |||||||||| ||||  || ||||||||||| ||| ||||    
T  13532986 acaaaccacacacaacttcaaaactaactttaacatccaccttcacgtctggcgtgggcctgagtccaatt 13533056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 13622526 - 13622596
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaatt 335  Q
    |||||| ||| ||||||||||||||||||| |||||||||| ||||  || ||||||||||| ||| ||||    
T  13622526 acaaaccacacacaacttcaaaactaactttaacatccaccttcacgtctggcgtgggcctgagtccaatt 13622596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 42160402 - 42160288
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    |||||||| ||||||||| ||||| |||||||||| |||||||||| | || ||||||  || |||||||||||  | | ||||| |||||   || |||    
T  42160402 acaaactataaacaactttaaaaccaacttcaacacccaccctcacgcttatcgtgggtttgagtctaattcccacattacaatctttaacttggcgttg 42160303  T
Q  365 ataccatgttaaata 379  Q
    |||||||| ||||||    
T  42160302 ataccatgctaaata 42160288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 12704226 - 12704178
Alignment:
Q  290 aacttcaacatccaccctcactcctagcgtgggcctgggtctaattccc 338  Q
    ||||||||||| ||||||||| |||||||||||||| |||| |||||||    
T  12704226 aacttcaacattcaccctcacgcctagcgtgggcctcggtccaattccc 12704178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 426
Target Start/End: Original strand, 42160368 - 42160403
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    |||||||||||||||||||||||||| |||||||||    
T  42160368 tgttgaagttggttttaaagttgtttatagtttgtt 42160403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Original strand, 27461242 - 27461279
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttat 428  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  27461242 tgttgaagttggttttgaagttgtatgtagtttgttat 27461279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 44307477 - 44307518
Alignment:
Q  477 ataaatataagccttggaagttgaaatcttgtcatttgttga 518  Q
    |||||||||| | |||||| ||||||||||||||||||||||    
T  44307477 ataaatataaacattggaaattgaaatcttgtcatttgttga 44307518  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 381
Target Start/End: Complemental strand, 5473306 - 5473190
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||| |  | |||||  ||||||||||||||   | | |||||||||| ||  || ||    
T  5473306 acaaactacaaacaacttcaaaaccaacttcaacacccaccttcacgctcaacgtggatctgggtctaattcctacattacaatccttaatccgactctg 5473207  T
Q  365 ataccatgttaaatagg 381  Q
    |||||||||||||||||    
T  5473206 ataccatgttaaatagg 5473190  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 378
Target Start/End: Original strand, 8745762 - 8745868
Alignment:
Q  272 acaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccat 371  Q
    ||||||||||||||||| ||||| ||||  ||||||||  |||||||||| |||| ||| ||||| |  | || ||||||||||||| || ||||| |||    
T  8745762 acaaacaacttcaaaaccaactttaacactcaccctcatgcctagcgtggccctgagtccaattcacatactggaatccttaacccaactctgatatcat 8745861  T
Q  372 gttaaat 378  Q
    |||||||    
T  8745862 gttaaat 8745868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 5473272 - 5473332
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttatttatcctatattgcacaggttct 451  Q
    |||||||||||||||| ||||||||||||||||||||||| |  |||||||| || |||||    
T  5473272 tgttgaagttggttttgaagttgtttgtagtttgttatttgttatatattgctcaagttct 5473332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 23972397 - 23972436
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  23972397 tgttgaagttgattttaaaattgtttgtagtttgttattt 23972436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 35035102 - 35035172
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaatt 335  Q
    ||||| || ||||||||||||||  |||||||||| |||||||| |  ||||||||||||| |||| ||||    
T  35035102 acaaattataaacaacttcaaaatcaacttcaacacccaccctcgcgtctagcgtgggcctaggtccaatt 35035172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 33804218 - 33804271
Alignment:
Q  268 aactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgg 321  Q
    ||||||||||||||||||||| |||| |||||  ||||||||| | ||||||||    
T  33804218 aactacaaacaacttcaaaaccaactccaacactcaccctcacgcatagcgtgg 33804271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Complemental strand, 3371721 - 3371628
Alignment:
Q  165 tgttaaatgagctttgatctcattccaaaagagttacttcaaaggatgagggtagtcaagcatgtttatacactcaacaaatcggaacctgagcaa 260  Q
    |||||||||||||| |||||||| |||||||   ||| ||||| |||||||||| |||||||||| |||||||||||||  |||||||| ||||||    
T  3371721 tgttaaatgagcttggatctcatcccaaaagc--tacctcaaaagatgagggtactcaagcatgtgtatacactcaacagttcggaacccgagcaa 3371628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 30602541 - 30602456
Alignment:
Q  302 caccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttgataccatgttaaataggtttgga 387  Q
    |||||||||||||||||||||||||| || |||| || || ||||||||||||||   || | ||| |||||||||||||||||||    
T  30602541 caccctcactcctagcgtgggcctggatccaatttccaaattgcaatccttaacctgactctaatatcatgttaaataggtttgga 30602456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 30602336 - 30602375
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  30602336 tgttgaagttggttttgaagttgtttgtagtttgttattt 30602375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Complemental strand, 39747917 - 39747878
Alignment:
Q  392 gttgaagttggttttaaagttgtttgtagtttgttattta 431  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  39747917 gttgaagttggtttcaaagttgtttgtagtttattattta 39747878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 299
Target Start/End: Complemental strand, 30602370 - 30602336
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaaca 299  Q
    |||||||||||||||||||||||| ||||||||||    
T  30602370 acaaactacaaacaacttcaaaaccaacttcaaca 30602336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 326
Target Start/End: Complemental strand, 10645761 - 10645725
Alignment:
Q  290 aacttcaacatccaccctcactcctagcgtgggcctg 326  Q
    |||||||||| |||||||||| |||||||||||||||    
T  10645761 aacttcaacacccaccctcacgcctagcgtgggcctg 10645725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 4666 - 4595
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattc 336  Q
    |||||||||||||||||||||||| |||||||||||| |||||||  | ||||||||| ||||||| |||||    
T  4666 acaaactacaaacaacttcaaaaccaacttcaacatcaaccctcatgcttagcgtgggtctgggtccaattc 4595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 4630 - 4667
Alignment:
Q  389 gatgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    |||||||||||||||||| |||||||||||||||||||    
T  4630 gatgttgaagttggttttgaagttgtttgtagtttgtt 4667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 374
Target Start/End: Original strand, 43829705 - 43829814
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggcctgggtctaattcccgaaatgcaatccttaacccagctttg 364  Q
    |||||||||||  ||||||||||| |||||||||| ||||||||||  |||  |||||||||  || || ||||  | |||||||||||||||  || ||    
T  43829705 acaaactacaaggaacttcaaaaccaacttcaacacccaccctcacgtctaatgtgggcctgaatccaactcccacactgcaatccttaacccgactctg 43829804  T
Q  365 ataccatgtt 374  Q
    ||||||||||    
T  43829805 ataccatgtt 43829814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 36201865 - 36201902
Alignment:
Q  393 ttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  36201865 ttgaagttggttttgaagttgtttatagtttgttattt 36201902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 1056 - 1095
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  1056 tgttgtagttggttttaaagttgtttgtagtttgttattt 1095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 3146 - 3185
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgttattt 430  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  3146 tgttgtagttggttttaaagttgtttgtagtttgttattt 3185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 426
Target Start/End: Complemental strand, 8402264 - 8402229
Alignment:
Q  391 tgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    ||||||||||||||||||||||||||||||||||||    
T  8402264 tgttgaagttggttttaaagttgtttgtagtttgtt 8402229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 31540324 - 31540369
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcac 310  Q
    |||||||||||||||||||||||| ||||||||||| ||| |||||    
T  31540324 acaaactacaaacaacttcaaaaccaacttcaacattcactctcac 31540369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 426
Target Start/End: Complemental strand, 31540359 - 31540323
Alignment:
Q  390 atgttgaagttggttttaaagttgtttgtagtttgtt 426  Q
    ||||||||||||||||| |||||||||||||||||||    
T  31540359 atgttgaagttggttttgaagttgtttgtagtttgtt 31540323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 8401993 - 8402065
Alignment:
Q  165 tgttaaatgagctttgatctcattccaaaagagttacttcaaaggatgagggtagtcaagcatgtttatacactc 239  Q
    |||||||| || || ||||||||||||||||  |||  |||||||| ||||||| |||||||| |||||||||||    
T  8401993 tgttaaataagtttggatctcattccaaaag--ttagctcaaaggaggagggtactcaagcatatttatacactc 8402065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 42193350 - 42193408
Alignment:
Q  265 acaaactacaaacaacttcaaaactaacttcaacatccaccctcactcctagcgtgggc 323  Q
    |||| |||||| |||||||||||   ||||||||||||||||||||  |||||||||||    
T  42193350 acaatctacaagcaacttcaaaatcgacttcaacatccaccctcacgtctagcgtgggc 42193408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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