View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_92 (Length: 341)
Name: NF10049A_low_92
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_92 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 5061801 - 5062105
Alignment:
| Q |
17 |
gaattcaaattgcaaaatcttagcccaataaatttcaacctaaaaggcccaagttcgcaaagaaggcattacttgaagaaaattgttcttctcaccatca |
116 |
Q |
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| T |
5061801 |
gaattcatattgcaaaatcttagcccaataaatttcaacctaaaaggcccaagttcacaaagaaggcattatttgaagaaaattgttcttctcaccatca |
5061900 |
T |
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| Q |
117 |
gttttgcttcaaaacaacaggaaaataagaatatattccagcaacagttaactgccatcgaggatcaacaacaacatcaacttgcggcatttaattgtcg |
216 |
Q |
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| T |
5061901 |
gttttgcttcaaaacagtaggaaaatacgaatatatcccagcaacagttaactgccatcgaggatcaacaacaacatcaacctgcggcatttaactgtcg |
5062000 |
T |
|
| Q |
217 |
tcggggaatatttttgtatttttctgatgtgttggagcaaaactgatcgtaagaagagcaattttctcaattgaaagtgaaaggagggaaacttaatgaa |
316 |
Q |
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| T |
5062001 |
ccggagaatatttttgtatttttctgatgtgctggagcaaaactgatcgtgagaagagcaattttctcaattgaaagtgaaaggagggaaacttaatgaa |
5062100 |
T |
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| Q |
317 |
agtgc |
321 |
Q |
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||||| |
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| T |
5062101 |
agtgc |
5062105 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 19312105 - 19312155
Alignment:
| Q |
231 |
tgtatttttctgatgtgttggagcaaaactgatcgtaagaagagcaatttt |
281 |
Q |
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| T |
19312105 |
tgtatttttctggtattttggagcaaaactgatggtaagaagagcaatttt |
19312155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 4861461 - 4861518
Alignment:
| Q |
226 |
atttttgtatttttctgatgtgttggagcaaaactgatcgtaagaagagcaattttct |
283 |
Q |
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| T |
4861461 |
attttcgtatttttctgatgctgtggagcaaaattgatagtgagaagagcaattttct |
4861518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 32285696 - 32285595
Alignment:
| Q |
92 |
aagaaaattgttcttctcaccatcagttttgcttcaaaacaacaggaaaataagaatatat-tccagcaacagttaactgccatcgaggatcaacaacaa |
190 |
Q |
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|||||||||| | |||||||||| | |||| || ||| || |||||||||| ||| |||| || |||||||||||| |||| ||| |||||||||||| |
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| T |
32285696 |
aagaaaattgctattctcaccattaatttttctctaaaccaccaggaaaatatgaaaatatctcaagcaacagttaattgccgccgaagatcaacaacaa |
32285597 |
T |
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| Q |
191 |
ca |
192 |
Q |
| |
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|| |
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| T |
32285596 |
ca |
32285595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 1410922 - 1410873
Alignment:
| Q |
94 |
gaaaattgttcttctcaccatcagttttgcttcaaaacaacaggaaaata |
143 |
Q |
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|||||||||||||||||| |||| ||||||| ||||||| |||| ||||| |
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| T |
1410922 |
gaaaattgttcttctcactatcatttttgctccaaaacatcagggaaata |
1410873 |
T |
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