View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049A_low_93 (Length: 341)
Name: NF10049A_low_93
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049A_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 28518944 - 28519089
Alignment:
| Q |
164 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcgtttgctgcaaaactgtcagaagatgaagtcaataagtta |
263 |
Q |
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| T |
28518944 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
28519043 |
T |
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| Q |
264 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattg |
309 |
Q |
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| T |
28519044 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattg |
28519089 |
T |
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Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
| Q |
34 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
84 |
Q |
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| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
28518866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
| Q |
176 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcgtttgctgcaaaactgtcagaagatgaagtcaataagttatct |
266 |
Q |
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| T |
12728953 |
tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct |
12728863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 268
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
| Q |
176 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcgtttgctgcaaaactgtcagaagatgaagtcaataagttatctgg |
268 |
Q |
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| T |
34291144 |
tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg |
34291236 |
T |
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