View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049A_low_99 (Length: 337)

Name: NF10049A_low_99
Description: NF10049A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049A_low_99
NF10049A_low_99
[»] chr8 (1 HSPs)
chr8 (6-319)||(36240960-36241272)
[»] chr5 (6 HSPs)
chr5 (6-206)||(33215070-33215268)
chr5 (10-206)||(18691034-18691230)
chr5 (10-206)||(41108975-41109171)
chr5 (106-206)||(41109727-41109827)
chr5 (22-75)||(22726480-22726534)
chr5 (43-80)||(33214546-33214583)
[»] chr3 (6 HSPs)
chr3 (6-206)||(25184725-25184925)
chr3 (34-201)||(35390487-35390660)
chr3 (6-90)||(55380329-55380413)
chr3 (44-79)||(42428432-42428467)
chr3 (159-203)||(24864854-24864898)
chr3 (44-76)||(9678749-9678781)
[»] chr7 (5 HSPs)
chr7 (6-203)||(17165852-17166052)
chr7 (52-206)||(41483079-41483239)
chr7 (123-206)||(7975991-7976074)
chr7 (164-206)||(18963145-18963187)
chr7 (40-76)||(29250494-29250530)
[»] chr1 (8 HSPs)
chr1 (6-203)||(5721846-5722042)
chr1 (10-206)||(11359325-11359521)
chr1 (44-80)||(52975688-52975724)
chr1 (40-76)||(1280528-1280564)
chr1 (38-88)||(35764138-35764188)
chr1 (43-76)||(49105523-49105556)
chr1 (44-76)||(17508545-17508577)
chr1 (44-80)||(43904365-43904401)
[»] chr4 (7 HSPs)
chr4 (6-206)||(25542284-25542490)
chr4 (6-106)||(11840869-11840969)
chr4 (6-76)||(35612-35682)
chr4 (43-78)||(48879617-48879652)
chr4 (37-78)||(40578890-40578931)
chr4 (39-76)||(40868891-40868928)
chr4 (44-72)||(45019069-45019097)
[»] chr2 (4 HSPs)
chr2 (6-208)||(39814526-39814727)
chr2 (14-196)||(12987338-12987526)
chr2 (39-87)||(25059704-25059752)
chr2 (39-87)||(25064503-25064551)
[»] chr6 (5 HSPs)
chr6 (6-79)||(10857321-10857394)
chr6 (11-106)||(832031-832126)
chr6 (123-206)||(832201-832284)
chr6 (39-87)||(23112484-23112532)
chr6 (39-87)||(23117282-23117330)
[»] scaffold0245 (1 HSPs)
scaffold0245 (40-76)||(6206-6242)
[»] scaffold0229 (1 HSPs)
scaffold0229 (40-76)||(6536-6572)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 36241272 - 36240960
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36241272 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctg 36241173  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaac 205  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36241172 tatcaataataatacatcattcccttattattatgcaat-atctcccaaataccatagaattatcattggtatttattcacatttgaaccagtatctaac 36241074  T
Q  206 aatttcattactatttatgcctacaacattgatcgattattttctgttatatacattgttgannnnnnnagggtgagaaaatcatgcatatgttcaaaag 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  36241073 aatttcattactatttatgcctacaacattgatcgattattttctgttatatacattgttgatttttttagggtgagaaaatcatgcatatgttcaaaag 36240974  T
Q  306 gctccaggacctcc 319  Q
    ||||||||||||||    
T  36240973 gctccaggacctcc 36240960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 33215268 - 33215070
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||    
T  33215268 aaaagggagggcattgggtaatttgtatgtgggttggtttgggagagactaggctctctaatttctagaggttggttacttttctgcagttactttcatg 33215169  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaac 205  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  33215168 tatcaataataa--catcattcccttattattatgcaataatctcccaaataccattgaattatcatcggtatttattcacatctgaaccagtatctaac 33215071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 18691034 - 18691230
Alignment:
Q  10 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatc 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  18691034 gggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 18691133  T
Q  110 aataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    |||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  18691134 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctaaca 18691230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 41108975 - 41109171
Alignment:
Q  10 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatc 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  41108975 gggaaggcattgggtattttgtatgtgggttggtttgggagagactgggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 41109074  T
Q  110 aataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    |||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  41109075 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctaaca 41109171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 206
Target Start/End: Original strand, 41109727 - 41109827
Alignment:
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaac 205  Q
    |||||||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  41109727 tatcaataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatcggtatttattcacatctgaaccagaatctaac 41109826  T
Q  206 a 206  Q
    |    
T  41109827 a 41109827  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 22726480 - 22726534
Alignment:
Q  22 ggtattttgtatgtgggtt-ggtttgggagagactaggctctctaattcctagag 75  Q
    ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||    
T  22726480 ggtatttcgtatgttggtttggtttgggagagactaggctctctaattcctagag 22726534  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 33214546 - 33214583
Alignment:
Q  43 tttgggagagactaggctctctaattcctagaggttgg 80  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  33214546 tttgggagagactagggtctctaattcctaaaggttgg 33214583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 25184725 - 25184925
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  25184725 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttccta 25184824  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaac 205  Q
    ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||    
T  25184825 tatcaataataaaacatcattcgcttattattatgcaataatctcccaaataccatagatttatcagtgatatttattcacatctgaaccagtatccaac 25184924  T
Q  206 a 206  Q
    |    
T  25184925 a 25184925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 35390487 - 35390660
Alignment:
Q  34 gtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatcaataataattcat------cattc 127  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||| | ||||||||||||||| |||      ||||     
T  35390487 gtgggttggtttgggagagactaggctctctaactcctaaaggttggttacctttctgcagttacttacatgtatcaataataatacatcacatgcattt 35390586  T
Q  128 ccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatc 201  Q
    |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  35390587 ccttattattttacaataatctaccaaataccatagaattatcattggtatttatagatatctgaaccagtatc 35390660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 55380413 - 55380329
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttct 90  Q
    |||| |||||||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  55380413 aaaaaggagggcattagttattttatatgttggttggtttgggagagactaggctctctaattcctagaggtttgttagttttct 55380329  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 79
Target Start/End: Original strand, 42428432 - 42428467
Alignment:
Q  44 ttgggagagactaggctctctaattcctagaggttg 79  Q
    ||||||||||||||||||||||||||||||||||||    
T  42428432 ttgggagagactaggctctctaattcctagaggttg 42428467  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 24864854 - 24864898
Alignment:
Q  159 catagaattatcattggtatttattcacatctgaaccagtatcta 203  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||    
T  24864854 catagaattaccattggtgtttattcatatctgaaccagtatcta 24864898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 9678749 - 9678781
Alignment:
Q  44 ttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||||||||||||| |||||||||||    
T  9678749 ttgggagagactaggctctctgattcctagagg 9678781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 17166052 - 17165852
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17166052 aaaagggagggcattgggtagtttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcctg 17165953  T
Q  106 t---atcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatct 202  Q
    |   ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  17165952 tatgatcaataataatatatcattcccttattattatgcaataatctcccaaataccatagaattatcatcgatatttattcacatctgaaccagtatct 17165853  T
Q  203 a 203  Q
    |    
T  17165852 a 17165852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 41483079 - 41483239
Alignment:
Q  52 gactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatcaataataattcatca------ttcccttattattatgcaata 145  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||      |||||||||||||||||||||    
T  41483079 gactaggctctctaattcctagaggtaggttacttttctgcagttactttcctgtatgaataataatacatcacgtgcattcccttattattatgcaata 41483178  T
Q  146 atctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||    
T  41483179 atctcccaaataccatagaattatcattggtatttatacatatctgaaccagtatataaca 41483239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 7975991 - 7976074
Alignment:
Q  123 cattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    |||||| | |||||| |||||||||||||||| |||   |||||||||||||||||||||||| ||||||||| ||||||||||    
T  7975991 cattccttgattattttgcaataatctcccaagtactgaagaattatcattggtatttattcatatctgaaccggtatctaaca 7976074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 18963187 - 18963145
Alignment:
Q  164 aattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    ||||||||| ||||||| |||||||||||||||||||||||||    
T  18963187 aattatcatcggtatttcttcacatctgaaccagtatctaaca 18963145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 29250494 - 29250530
Alignment:
Q  40 tggtttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||||||||||||||||| |||||||||||    
T  29250494 tggtttgggagagactaggctctctgattcctagagg 29250530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 6 - 203
Target Start/End: Original strand, 5721846 - 5722042
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |     
T  5721846 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttctta 5721944  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatcta 203  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  5721945 tatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatcggtatttattcacatctgaaccagaatcta 5722042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 206
Target Start/End: Complemental strand, 11359521 - 11359325
Alignment:
Q  10 gggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatc 109  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  11359521 gggaaggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcagttactttcttatatc 11359422  T
Q  110 aataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    |||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  11359421 aataataatagatcattcctttattattatgcaataatctaccaaataccatagaattatcatctgtatttattcacatctgaaccagaatctaaca 11359325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 52975724 - 52975688
Alignment:
Q  44 ttgggagagactaggctctctaattcctagaggttgg 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  52975724 ttgggagagactaggctctctaattcctagaggttgg 52975688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 1280528 - 1280564
Alignment:
Q  40 tggtttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1280528 tggtttgggagagactaggctctctgattcctagagg 1280564  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 35764138 - 35764188
Alignment:
Q  38 gttggtttgggagagactaggctctctaattcctagaggttggttactttt 88  Q
    |||||||||||||||||||| |||| ||||||||| ||||| |||| ||||    
T  35764138 gttggtttgggagagactagactctataattcctaaaggtttgttagtttt 35764188  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 49105523 - 49105556
Alignment:
Q  43 tttgggagagactaggctctctaattcctagagg 76  Q
    |||||||||||||||||||||| |||||||||||    
T  49105523 tttgggagagactaggctctctgattcctagagg 49105556  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 17508545 - 17508577
Alignment:
Q  44 ttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||| |||||||||||||||||||||    
T  17508545 ttgggagagacaaggctctctaattcctagagg 17508577  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 43904365 - 43904401
Alignment:
Q  44 ttgggagagactaggctctctaattcctagaggttgg 80  Q
    ||||||||||||||||||||||||| | |||||||||    
T  43904365 ttgggagagactaggctctctaatttcaagaggttgg 43904401  T

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Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 6 - 206
Target Start/End: Complemental strand, 25542490 - 25542284
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  25542490 aaaagggagggcattgggtattttttatgtgggttggtttgggagggactaggctctctaattgctagaggttggttacttttatgcagttactttcctg 25542391  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccataga------attatcattggtatttattcacatctgaaccagta 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||      |||||||| |||||||||||||||||||||| |||    
T  25542390 tatcaataataatacatcattcccttattattatgcaataatctcccaaataccatagaattagaattatcatcggtatttattcacatctgaaccggta 25542291  T
Q  200 tctaaca 206  Q
    |||||||    
T  25542290 tctaaca 25542284  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 11840869 - 11840969
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    ||||||||||||| |||||||||||||| | | |||||||||||||||||||| ||||||||||||||||||| |||| |||| |||| ||| |||||||    
T  11840869 aaaagggagggcactgggtattttgtatatagtttggtttgggagagactaggttctctaattcctagaggtttgttaattttatgcagttattttcctg 11840968  T
Q  106 t 106  Q
    |    
T  11840969 t 11840969  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 35682 - 35612
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||| || || ||||||||||| || ||||||||||||| ||||||  | ||||||||||||||||    
T  35682 aaaagggagagctttaggtattttgtacgttggttggtttgggatagactacaccctctaattcctagagg 35612  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 48879652 - 48879617
Alignment:
Q  43 tttgggagagactaggctctctaattcctagaggtt 78  Q
    |||||||||||||||||||||||| |||||||||||    
T  48879652 tttgggagagactaggctctctaagtcctagaggtt 48879617  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 40578931 - 40578890
Alignment:
Q  37 ggttggtttgggagagactaggctctctaattcctagaggtt 78  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  40578931 ggttgggttgggagagactaagctctctaattcctagtggtt 40578890  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 40868891 - 40868928
Alignment:
Q  39 ttggtttgggagagactaggctctctaattcctagagg 76  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  40868891 ttggtttgagagagaataggctctctaattcctagagg 40868928  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 45019097 - 45019069
Alignment:
Q  44 ttgggagagactaggctctctaattccta 72  Q
    |||||||||||||||||||||||||||||    
T  45019097 ttgggagagactaggctctctaattccta 45019069  T

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Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 39814526 - 39814727
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |     
T  39814526 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggt-acttttctgcagttactttctta 39814624  T
Q  106 tatcaataataattcatcattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaac 205  Q
    |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||| ||||| |    
T  39814625 tatcaataataatagatcattcctttattattatgcaataatctcccaaataccatagaattatcatctgcatttattcacatctgaaccagaatctatc 39814724  T
Q  206 aat 208  Q
    |||    
T  39814725 aat 39814727  T

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Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 12987526 - 12987338
Alignment:
Q  14 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgtatcaata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  12987526 gggcattgggtattttgtatgtgggttggtttgggagagactaggctctctgattcctagaggttgattacttttctgcagttactttcctgtatcaata 12987427  T
Q  114 ataattcat------cattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaacca 196  Q
    ||||| |||      ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12987426 ataatacatcacgtgcattcccttattattatgctataatctcccaaataccatagaattatcattggtatttattcatatctgaacca 12987338  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25059704 - 25059752
Alignment:
Q  39 ttggtttgggagagactaggctctctaattcctagaggttggttacttt 87  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  25059704 ttggtttgggagattctaggctctctaagtcctagaggttgattacttt 25059752  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 25064503 - 25064551
Alignment:
Q  39 ttggtttgggagagactaggctctctaattcctagaggttggttacttt 87  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  25064503 ttggtttgggagattctaggctctctaagtcctagaggttgattacttt 25064551  T

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Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 10857394 - 10857321
Alignment:
Q  6 aaaagggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttg 79  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10857394 aaaagggagggcattgagtattttgtatgttggttggtttgggagagactaggctctctaattcctagaggttg 10857321  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 832031 - 832126
Alignment:
Q  11 ggagggcattgggtattttgtatgtgggttggtttgggagagactaggctctctaattcctagaggttggttacttttctgcaattactttcctgt 106  Q
    |||||||| || ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| |||| |||| ||||||||||||    
T  832031 ggagggcaatgagtattttgtatgttggttggtttgggagagactaggctctataattcctagaggtttgttagttttatgcagttactttcctgt 832126  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 832201 - 832284
Alignment:
Q  123 cattcccttattattatgcaataatctcccaaataccatagaattatcattggtatttattcacatctgaaccagtatctaaca 206  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |   ||||||||||||||||||||    
T  832201 cattcccttattattatccaataatcccccaaatatcatagaattatcattggtatttaatattatctgaaccagtatctaaca 832284  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23112484 - 23112532
Alignment:
Q  39 ttggtttgggagagactaggctctctaattcctagaggttggttacttt 87  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  23112484 ttggtttgggagattctaggctctctaagtcctagaggttgattacttt 23112532  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 23117282 - 23117330
Alignment:
Q  39 ttggtttgggagagactaggctctctaattcctagaggttggttacttt 87  Q
    |||||||||||||  ||||||||||||| |||||||||||| |||||||    
T  23117282 ttggtttgggagattctaggctctctaagtcctagaggttgattacttt 23117330  T

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Target: scaffold0245 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 6206 - 6242
Alignment:
Q  40 tggtttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6206 tggtttgggagagactaggctctctgattcctagagg 6242  T

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Target: scaffold0229 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 6536 - 6572
Alignment:
Q  40 tggtttgggagagactaggctctctaattcctagagg 76  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6536 tggtttgggagagactaggctctctgattcctagagg 6572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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