View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_high_13 (Length: 290)

Name: NF10049_high_13
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_high_13
NF10049_high_13
[»] chr5 (14 HSPs)
chr5 (15-273)||(41337139-41337397)
chr5 (29-242)||(31188434-31188647)
chr5 (29-232)||(31178399-31178602)
chr5 (29-241)||(31225166-31225378)
chr5 (26-212)||(41369731-41369918)
chr5 (120-273)||(41316335-41316488)
chr5 (43-273)||(41332238-41332468)
chr5 (180-270)||(41286404-41286494)
chr5 (120-273)||(41328302-41328455)
chr5 (25-272)||(41366400-41366644)
chr5 (38-269)||(41324322-41324553)
chr5 (120-273)||(41310595-41310748)
chr5 (126-171)||(41431274-41431319)
chr5 (29-69)||(41286280-41286320)
[»] chr4 (1 HSPs)
chr4 (28-273)||(17249091-17249336)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 41337139 - 41337397
Alignment:
Q  15 agcatagggcctattgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagatta 114  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337139 agcattgggcctattgggagaattttgtattgctgacttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagatta 41337238  T
Q  115 caaggagagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337239 caaggagagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctca 41337338  T
Q  215 aggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatca 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41337339 aggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatca 41337397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 31188647 - 31188434
Alignment:
Q  29 tgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattga 128  Q
    ||||||||||||||||||||||| ||||||||||| |||||||  |||||  ||| ||||| | |||||| | |||||| |   | ||   |||||||||    
T  31188647 tgggagaattttgtattgctgatgtgtatccttctgttaaaatgtttcaatgggtgagtagggcgaagacgaaagttgaaaagcttcataaagagattga 31188548  T
Q  129 taggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaa 228  Q
    || |||||||||||| ||||||  |||||||| ||||| |||||   ||  ||||||||||||||| |||||||||  |||||||||| ||||||| |||    
T  31188547 tatgatattgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaa 31188448  T
Q  229 aatgttcactcaca 242  Q
    |||| |||||||||    
T  31188447 aatgatcactcaca 31188434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 31178602 - 31178399
Alignment:
Q  29 tgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattga 128  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||  ||| ||| | |||||||||| | |||| |  || ||   |||||||||    
T  31178602 tgggaggattttgtattgctgatgtgtatccttctattaaaatgcttcaacgggtgagtggggtgaagaccaaatttgaaaagtttcataaagagattga 31178503  T
Q  129 taggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaa 228  Q
    || |||||||||||| ||| || ||||||||| ||||| |||||   ||  ||||||||||||||| ||||||||||  ||| ||||| ||||||| |||    
T  31178502 tatgatattgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaa 31178403  T
Q  229 aatg 232  Q
    ||||    
T  31178402 aatg 31178399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 31225166 - 31225378
Alignment:
Q  29 tgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattga 128  Q
    |||||| ||||||||||| |||| ||||||||||||| ||||| ||||||  ||| ||||| | |||||||| |||||| |   | ||   |||||||||    
T  31225166 tgggaggattttgtattgttgatgtgtatccttctataaaaatgcttcaatgggtgagtagggcgaagaccaaagttgaaaagcttcataaagagattga 31225265  T
Q  129 taggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaa 228  Q
    || |||||||||||| |||||| ||||||||| ||||| |||||   ||  ||||||||||||||| |||||||||  |||||||||| | ||||| |||    
T  31225266 tatgatattgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaa 31225365  T
Q  229 aatgttcactcac 241  Q
    ||||  |||||||    
T  31225366 aatgagcactcac 31225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 41369731 - 41369918
Alignment:
Q  26 tattgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattaca-aggagaga 124  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |  ||||||| | | || | | | || || |  |     
T  41369731 tattggaaggattttgcattgctgatttgtatccttctattaaaatacttcaaagggtaagtagggcaaagaccaaaatggaaaaacttcagagaaaggc 41369830  T
Q  125 ttgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttct 212  Q
     |||||  ||||||||||| |||||||||||||| | ||||||||| ||  ||  || |||||| |||||||||||||||||||||||    
T  41369831 atgatattatattgcaagatatcatcaatgatcacaaaaacaatcatagagaagaaatcaaggaagaagacctagttgatgttcttct 41369918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 41316335 - 41316488
Alignment:
Q  120 agagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggtt 219  Q
    |||| |||||| || |||||||||||||||| | ||||| | || || |||||   ||  |||||| |||||||| ||||| ||||||||||||||| ||    
T  41316335 agagcttgatatgacattgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagatt 41316434  T
Q  220 caacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatca 273  Q
    ||||| ||||||  |||||||||||| || || |||||||| ||||||||||||    
T  41316435 caacaggaaaattatcactcacaacatcctttaactgatgacaatataaaatca 41316488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 41332238 - 41332468
Alignment:
Q  43 attgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattgataggatattgcaag 142  Q
    ||||| ||||||||||||||||||||||| ||||||    | ||||| | |||||||| | | || | | | ||  ||||| |||||| |||| ||||||    
T  41332238 attgcagatttgtatccttctattaaaatgcttcaatgcatgagtagggagaagaccaaaatggaaaaaattcatagagagcttgatatgataatgcaag 41332337  T
Q  143 acatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcaca 242  Q
    |||||||| | ||||| |||| || |||||   || ||||||| |||||||| ||||| ||||||||||||||| ||||||| ||||||  | ||||| |    
T  41332338 acatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattattactcaga 41332437  T
Q  243 acaacccttgactgatgaaaatataaaatca 273  Q
    ||| || || || ||||| ||||| ||||||    
T  41332438 acatcctttaaccgatgacaatatgaaatca 41332468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 41286404 - 41286494
Alignment:
Q  180 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaa 270  Q
    |||||| |||||||| ||| ||||||||||||||||| ||||||| |||| ||  |||||| |||| |||||||||||||| ||| |||||    
T  41286404 aagcaaagatgaagatctaattgatgttcttctcaagattcaacaggaaagtgagcactcataacatcccttgactgatgataatttaaaa 41286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 41328302 - 41328455
Alignment:
Q  120 agagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggtt 219  Q
    ||||||||||| ||||   |||||||||||| | ||||| ||||  | |||||   || ||||||| |||||||| ||||| ||||||||||||||| ||    
T  41328302 agagattgatatgatagcacaagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagatt 41328401  T
Q  220 caacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatca 273  Q
    ||||| ||||||  ||||||| |||| || || || ||||| ||||| ||||||    
T  41328402 caacaggaaaattatcactcagaacatcctttaaccgatgacaatatgaaatca 41328455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 41366400 - 41366644
Alignment:
Q  25 ctattgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagaga 124  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||| ||||||| | ||||| |    | ||  | | |||| | | | ||  ||||||    
T  41366400 ctattgggaggattttcttttgcagatttgtatccttctattaaaattcttcaaatgttaagttggccaaggaaaaaacttgaaaaacttcatagagaga 41366499  T
Q  125 ttgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaaca 224  Q
     ||||| |||||||||||| |||||| ||||||| | ||  | |||||  ||| | || ||| |||| || ||||| ||||||||||||||| ||||||     
T  41366500 ctgatatgatattgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacg 41366599  T
Q  225 tgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatc 272  Q
    || |||   |||||||||||| |||||||| || || |||||||||||    
T  41366600 tgtaaa---tcactcacaacatcccttgaccgacgacaatataaaatc 41366644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 269
Target Start/End: Original strand, 41324322 - 41324553
Alignment:
Q  38 tttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattgataggatatt 137  Q
    ||||||||| |||||||||||||||||||||| | ||||||   || ||||| | |||| ||| | | || | | | ||   ||||||||||| ||||||    
T  41324322 tttgtattgttgatttgtatccttctattaaattgcttcaatgcgtgagtagggcgaaggccaaaatggaaaaacttcacaaagagattgatatgatatt 41324421  T
Q  138 gcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcac 237  Q
    ||||||||| ||| | ||||| | || || |||||   ||   ||||| || ||| | ||||| ||||||||||||||| ||||||| ||||||  ||||    
T  41324422 gcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatcac 41324521  T
Q  238 tcacaacaacccttgactgatgaaaatataaa 269  Q
    |||||||| || || || ||||| ||||||||    
T  41324522 tcacaacatcctttaaccgatgacaatataaa 41324553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 41310595 - 41310748
Alignment:
Q  120 agagattgataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggtt 219  Q
    ||||||| ||| ||||||||||||||||||| | ||||| | || || || ||   ||   ||||| |||||||| ||||| ||||||||||||||| ||    
T  41310595 agagatttatatgatattgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagatt 41310694  T
Q  220 caacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatca 273  Q
     |||| ||||||  ||||||| |||| || || || ||||| ||||| ||||||    
T  41310695 aaacaggaaaattatcactcagaacatcctttaacggatgacaatatgaaatca 41310748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 41431274 - 41431319
Alignment:
Q  126 tgataggatattgcaagacatcatcaatgatcatagaaacaatcac 171  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  41431274 tgatacgatattgcaagacatcatcaatgatcataaaaacagtcac 41431319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 41286280 - 41286320
Alignment:
Q  29 tgggagaattttgtattgctgatttgtatccttctattaaa 69  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  41286280 tgggaggattttgcattgttgatttgtatccttctattaaa 41286320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 28 - 273
Target Start/End: Complemental strand, 17249336 - 17249091
Alignment:
Q  28 ttgggagaattttgtattgctgatttgtatccttctattaaaatacttcaaaaggtaagtagagtgaagaccagagttgagagattacaaggagagattg 127  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||||   ||||| |||| | | || | | | ||  | || ||||    
T  17249336 ttgggaggattttgtattgttgatttgtatccttctatcaaaatacttaaaagggtaagtcaggtgaaaaccaaaatggaaaaacttcatagggaaattg 17249237  T
Q  128 ataggatattgcaagacatcatcaatgatcatagaaacaatcacagtaaaacaagcaaggatgaagacctagttgatgttcttctcaaggttcaacatga 227  Q
    ||| |||||||||||| |||||  ||||||| |||||    || |  ||| || ||||||||||||| |||||||||| |||| ||||| ||||||| ||    
T  17249236 atatgatattgcaagatatcatagatgatcacagaaatggacaaaacaaagcacgcaaggatgaagatctagttgatgctcttatcaagattcaacaaga 17249137  T
Q  228 aaatgttcactcacaacaacccttgactgatgaaaatataaaatca 273  Q
    || || | || ||||| |  | ||||||||||| ||||||||||||    
T  17249136 aagtgattacccacaaaattcattgactgatgacaatataaaatca 17249091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University