View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_high_15 (Length: 251)

Name: NF10049_high_15
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_high_15
NF10049_high_15
[»] chr7 (5 HSPs)
chr7 (1-99)||(4834424-4834523)
chr7 (159-223)||(29912936-29913000)
chr7 (153-207)||(26247069-26247123)
chr7 (167-219)||(18290923-18290975)
chr7 (156-194)||(29865648-29865686)
[»] chr8 (16 HSPs)
chr8 (159-223)||(16249700-16249764)
chr8 (159-223)||(16312910-16312974)
chr8 (159-223)||(34801177-34801241)
chr8 (177-225)||(16311460-16311508)
chr8 (167-224)||(16221272-16221329)
chr8 (177-225)||(16248247-16248295)
chr8 (177-225)||(34802611-34802659)
chr8 (177-225)||(37249388-37249436)
chr8 (159-223)||(37250829-37250893)
chr8 (167-217)||(18431231-18431281)
chr8 (169-217)||(15342741-15342789)
chr8 (169-217)||(15431806-15431854)
chr8 (169-217)||(15523110-15523158)
chr8 (159-207)||(16311189-16311237)
chr8 (171-219)||(17887626-17887674)
chr8 (159-207)||(37249148-37249196)
[»] chr5 (7 HSPs)
chr5 (159-223)||(8128094-8128158)
chr5 (159-223)||(29865535-29865599)
chr5 (177-218)||(29864091-29864132)
chr5 (159-223)||(4062504-4062568)
chr5 (177-225)||(4063343-4063391)
chr5 (159-223)||(7332601-7332665)
chr5 (159-207)||(29863813-29863861)
[»] chr3 (6 HSPs)
chr3 (159-223)||(19817065-19817129)
chr3 (167-225)||(52752633-52752691)
chr3 (172-223)||(20934675-20934726)
chr3 (167-218)||(52754736-52754787)
chr3 (167-217)||(14240968-14241018)
chr3 (167-207)||(35686153-35686193)
[»] chr2 (3 HSPs)
chr2 (153-217)||(13439003-13439067)
chr2 (169-217)||(45054466-45054514)
chr2 (159-207)||(5786592-5786640)
[»] chr1 (6 HSPs)
chr1 (177-225)||(17001873-17001921)
chr1 (161-225)||(49878699-49878763)
chr1 (177-225)||(34161330-34161378)
chr1 (159-217)||(17006155-17006213)
chr1 (179-217)||(3417504-3417542)
chr1 (169-210)||(31089981-31090022)
[»] chr4 (7 HSPs)
chr4 (156-223)||(55050390-55050457)
chr4 (161-217)||(11793675-11793731)
chr4 (177-225)||(26288212-26288260)
chr4 (159-223)||(26289659-26289723)
chr4 (167-218)||(17449738-17449789)
chr4 (167-225)||(13917824-13917881)
chr4 (177-225)||(55051228-55051276)
[»] chr6 (6 HSPs)
chr6 (159-223)||(23409750-23409814)
chr6 (167-219)||(21055833-21055885)
chr6 (171-225)||(3531708-3531762)
chr6 (160-201)||(9451974-9452015)
chr6 (156-222)||(4791264-4791332)
chr6 (159-207)||(23408001-23408049)
[»] scaffold0169 (1 HSPs)
scaffold0169 (169-210)||(4853-4894)
[»] scaffold0119 (1 HSPs)
scaffold0119 (167-223)||(40939-40995)
[»] scaffold0159 (1 HSPs)
scaffold0159 (159-207)||(30965-31013)
[»] scaffold0021 (1 HSPs)
scaffold0021 (169-217)||(128726-128774)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4834424 - 4834523
Alignment:
Q  1 aagtgaagatggagagtaaattaagagtgtgattgtataaaggatttaggaggggagtggatgatttgc-ttttcttttcgaaattatggatattataac 99  Q
    ||||||||||||| ||||||||||| |||||||||||| || | ||||||| ||| ||| |||| |||| |||| |||| ||||||||||||||||||||    
T  4834424 aagtgaagatggaaagtaaattaagggtgtgattgtatgaaaggtttaggaagggtgtgaatgacttgctttttgtttttgaaattatggatattataac 4834523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 29913000 - 29912936
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  29913000 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 29912936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 26247069 - 26247123
Alignment:
Q  153 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  26247069 catataattttaaatgtctaataaacatgtattttgtcaactcagcataacacat 26247123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 18290923 - 18290975
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  18290923 tgtctaataaacatgtattttgtaaattcatcataacacatgtacatttttca 18290975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 29865648 - 29865686
Alignment:
Q  156 atgattttaattgtctaataaacatgtattttgtcaatt 194  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  29865648 atgactttaaatgtctaataaacatgtattttgtcaatt 29865686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 16249700 - 16249764
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  16249700 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 16249764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 16312910 - 16312974
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  16312910 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 16312974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 34801241 - 34801177
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  34801241 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 34801177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16311460 - 16311508
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  16311460 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 16311508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 16221272 - 16221329
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgt 224  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| |||||    
T  16221272 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgt 16221329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 16248247 - 16248295
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  16248247 acatgtattttttcaattcagcataacaaatctacaattttctattgtc 16248295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 34802659 - 34802611
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||| |||||||||||||| | ||||||||||||| ||||||    
T  34802659 acatgtattttatcaattcagcataacaaatctacaattttctattgtc 34802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 37249388 - 37249436
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||| ||||||| ||||||    
T  37249388 acatgtattttgtcaattcagcataacaaatctataattttctattgtc 37249436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 37250829 - 37250893
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| | ||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  37250829 attttaaatatctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattg 37250893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 18431231 - 18431281
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||| |||||||||||| |  ||| ||||||||||||||||||||    
T  18431231 tgtctaataagcatgtattttgttacctcatcataatacatctacaatttt 18431281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15342741 - 15342789
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15342741 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15431806 - 15431854
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15431806 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15431854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 15523110 - 15523158
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||| | ||||||||||||| ||||||||| |||| |||||||||    
T  15523110 tctaataatcgtgtattttgtcaactcagcataacacatatacaatttt 15523158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 16311189 - 16311237
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  16311189 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 16311237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 17887674 - 17887626
Alignment:
Q  171 taataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  17887674 taataaacatgtattttgtaaattcatcataacacatgtacatttttca 17887626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 37249148 - 37249196
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  37249148 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 37249196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 8128094 - 8128158
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  8128094 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 8128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 29865535 - 29865599
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||| | |||||||| ||||    
T  29865535 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatatgcaattttccattg 29865599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 29864091 - 29864132
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  29864091 acatgtattttgtcaattcagcataacaaatctacaattttc 29864132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 4062568 - 4062504
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| | ||||||||||||||||||| | || ||||||||| |||||| |||||||| ||||    
T  4062568 attttaaatctctaataaacatgtattttctgaactcagcataacacatctgcaattttctattg 4062504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 4063391 - 4063343
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||  | ||||||||||||| ||||||    
T  4063391 acatgtattttgtcaattcagcatagcaaatctacaattttccattgtc 4063343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 7332601 - 7332665
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||| ||||||||| || ||| ||||| |||||| |||||||| ||||    
T  7332601 attttaaatgtctaataaacacgtattttgtgaactcatcataacacatctgcaattttccattg 7332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 29863813 - 29863861
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  29863813 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 29863861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 19817065 - 19817129
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||||||||| |||||| |||||||| ||||    
T  19817065 attttaaatgtctaataaacatgtattttgtgaactcagcataacacatctgcaattttccattg 19817129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 52752691 - 52752633
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| | ||||| ||||||    
T  52752691 tgtctaataaacatgtattttgtaaactcagcataacacatctatatttttccattgtc 52752633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 20934675 - 20934726
Alignment:
Q  172 aataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    |||||| |||||||||||||||||| || |||||||||||| ||||| ||||    
T  20934675 aataaatatgtattttgtcaattcatcaaaatacatctacatttttctattg 20934726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 52754787 - 52754736
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    ||||||||||| |||||||||| ||| ||||||||| ||||||||| |||||    
T  52754787 tgtctaataaatatgtattttgccaactcagcataacacatctacatttttc 52754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 14240968 - 14241018
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||||||||||||||||||| ||| ||||| || |||||| ||||    
T  14240968 tgtctaataaacatgtattttgtcaactcaacataacacttctacattttt 14241018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 35686193 - 35686153
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  35686193 tgtctaataaacatgtattttgttaattcatcataacacat 35686153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 13439003 - 13439067
Alignment:
Q  153 catatgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||| ||||||| ||||||||||| |||||||||||  ||||||||||| ||||||||||||||    
T  13439003 catataattttaaatgtctaataaatatgtattttgtttattcagcataacacatctacaatttt 13439067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 45054466 - 45054514
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||| ||||    
T  45054466 tctaataaacatgtattttgtcaactcaacataacacatctacattttt 45054514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 5786592 - 5786640
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  5786592 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 5786640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 17001873 - 17001921
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17001873 acatgtattttgtcaattcagcataataaatctacaattttccattgtc 17001921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 49878763 - 49878699
Alignment:
Q  161 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||||||||| || ||||||||| ||||||| | |||| |||||||    
T  49878763 tttaattgtctaataaacatgtattttgtaaactcagcataacacatctatattttttaattgtc 49878699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 34161378 - 34161330
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  34161378 acatgtattttgtcaattcagcataacaaatctacaattttccattgtc 34161330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17006155 - 17006213
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||    
T  17006155 attttaaatgtctaataaacatgtattttttgaactcagcataacacatctgcaatttt 17006213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 3417504 - 3417542
Alignment:
Q  179 atgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  3417504 atgtattttgtcaattcagcataatgcatcaacaatttt 3417542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 31089981 - 31090022
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatcta 210  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  31089981 tctaataaacatgtattttatcaattcaacataacacatcta 31090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 55050457 - 55050390
Alignment:
Q  156 atgattttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    |||||||||| ||||||||||||||||||||| | || ||||||||| |||||| |||||||| ||||    
T  55050457 atgattttaaatgtctaataaacatgtattttctgaactcagcataacacatctgcaattttccattg 55050390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 11793731 - 11793675
Alignment:
Q  161 tttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  11793731 tttaattgtctaataaacatgtattttgttagttcaacataacacatctgcaatttt 11793675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 26288212 - 26288260
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||||||||| | |||||| |||||| ||||||    
T  26288212 acatgtattttgtcaattcagcataacaaatctacgattttcgattgtc 26288260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 26289659 - 26289723
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||| |||||||||||| |||||| || ||||||||| |||||| |||||||| ||||    
T  26289659 attttaaatgtgtaataaacatgtcttttgtgaactcagcataacacatctgcaattttccattg 26289723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 17449789 - 17449738
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttc 218  Q
    |||||||| ||| ||||||||||||| | |||||||| ||||||||||||||    
T  17449789 tgtctaattaacgtgtattttgtcaacttagcataatgcatctacaattttc 17449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 13917881 - 13917824
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    ||||||||||||||||||||||| |||||| ||||| |||| ||| |||||| ||||||    
T  13917881 tgtctaataaacatgtattttgttaattcatcataacacatgtac-attttccattgtc 13917824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 55051276 - 55051228
Alignment:
Q  177 acatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  55051276 acatgtattttgtcaattcaacatagcaaatctacaattttccattgtc 55051228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 23409750 - 23409814
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||| ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  23409750 attttaaatgtctaataaacatgtattttgtgaactcatcataacacatctgcaattttccattg 23409814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 21055833 - 21055885
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttca 219  Q
    ||||||||||||||||||||||| |||||| ||||| |||| |||| ||||||    
T  21055833 tgtctaataaacatgtattttgttaattcatcataacacatgtacatttttca 21055885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 3531708 - 3531762
Alignment:
Q  171 taataaacatgtattttgtcaattcagcataatacatctacaattttcaattgtc 225  Q
    |||||||||| |||||||||||  || ||||| || |||||||||||||||||||    
T  3531708 taataaacatatattttgtcaacccaacataacacttctacaattttcaattgtc 3531762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 9451974 - 9452015
Alignment:
Q  160 ttttaattgtctaataaacatgtattttgtcaattcagcata 201  Q
    |||||| ||||||||||||||||||||||| || ||||||||    
T  9451974 ttttaaatgtctaataaacatgtattttgtgaactcagcata 9452015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 222
Target Start/End: Original strand, 4791264 - 4791332
Alignment:
Q  156 atgattttaa-ttgtctaataaacatgta-ttttgtcaattcagcataatacatctacaattttcaatt 222  Q
    |||||||||| ||||||||||| ||| || ||||||||| ||||||||| ||||| ||||||| |||||    
T  4791264 atgattttaaattgtctaataagcatatatttttgtcaactcagcataagacatcgacaatttacaatt 4791332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 23408001 - 23408049
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||| |||||||||||||||||||||| | ||||||| ||||    
T  23408001 attttaaatgtataataaacatgtattttgtcaacttagcataacacat 23408049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 4894 - 4853
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatcta 210  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  4894 tctaataaacatgtattttgtcaactcagcataaaacatcta 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 40995 - 40939
Alignment:
Q  167 tgtctaataaacatgtattttgtcaattcagcataatacatctacaattttcaattg 223  Q
    ||||||||||||||||||||||| || ||| ||||| |||||| |||||||| ||||    
T  40995 tgtctaataaacatgtattttgtgaactcaacataacacatctgcaattttccattg 40939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 30965 - 31013
Alignment:
Q  159 attttaattgtctaataaacatgtattttgtcaattcagcataatacat 207  Q
    ||||||| ||||||||||||||||||||||| |||| || |||| ||||    
T  30965 attttaaatgtctaataaacatgtattttgttaatttagtataacacat 31013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 128726 - 128774
Alignment:
Q  169 tctaataaacatgtattttgtcaattcagcataatacatctacaatttt 217  Q
    ||||||||||||||||||||||||  || ||||| ||||||||| ||||    
T  128726 tctaataaacatgtattttgtcaaaacatcataacacatctacattttt 128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University