View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_high_21 (Length: 245)
Name: NF10049_high_21
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 30945446 - 30945670
Alignment:
| Q |
1 |
ccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatatatttcaagttaacttttca |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
30945446 |
ccaccaaaacctttggtttcttctcctacaagatcattattggaatcttcaacttcttgaaatttggatctataag--tatatttcaagttaacttttca |
30945543 |
T |
|
| Q |
101 |
ttttgtnnnnnnnnnnnnnnggtatgttcttcataatacttttttcgtacttnnnnnnnnnnnnnnnnnnggcaagtagattacatatatgtgattcaaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30945544 |
ttttgtaaaaaaatgaaaaaggtatgttcttcataatacttttttcgtacttttattattattattattaggcaagtagattacatatatgtgattcaaa |
30945643 |
T |
|
| Q |
201 |
taccaatgtgatctatgtggataactg |
227 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
30945644 |
taccaatgtgatctatgtggataactg |
30945670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 30955706 - 30955809
Alignment:
| Q |
1 |
ccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctattagtatatatttcaagttaacttttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
30955706 |
ccaccaaaacctttggtttcttctcctactagatcattattggaatcttcaacttcttgaaatttggatctataag--tatatttcaagttaacttttca |
30955803 |
T |
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| Q |
101 |
ttttgt |
106 |
Q |
| |
|
|||||| |
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|
| T |
30955804 |
ttttgt |
30955809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 30955869 - 30955921
Alignment:
| Q |
172 |
gcaagtagattacatatatgtgattcaaataccaatgtgatctatgtggataa |
224 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30955869 |
gcaattagattacatatatgtgattcaaataccaatgtgatctatgtggataa |
30955921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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