View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_high_27 (Length: 238)
Name: NF10049_high_27
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_high_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 38483156 - 38483378
Alignment:
| Q |
16 |
ttccagacagacaatgtccgcaaccaacgggaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctcctccagacaacatcgattccc |
115 |
Q |
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| T |
38483156 |
ttccagacagacaatgtccgcaaccaacgagaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctcctccagacaacatcgattccc |
38483255 |
T |
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| Q |
116 |
tcgatgcctctgtaatccgctcgttccggaagaatcttctacgtaattacacttactggtgcagttacttgcatgttaagtcaagtgtctcgcttcctga |
215 |
Q |
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| T |
38483256 |
tcgatgcctctgtaatccgctcgttccggaagaatcttctacgtaattacacttcctggtgcagttacttgcatgttaagtcaagtgtctcgcttcctga |
38483355 |
T |
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| Q |
216 |
tcttaaaaataataactctgatc |
238 |
Q |
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| T |
38483356 |
tcttaaaaataataactctgatc |
38483378 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 30117546 - 30117655
Alignment:
| Q |
19 |
cagacagacaatgtccgcaaccaacgggaacatgtcctcctccatctcgccaatgctcagatgcgtctcaatcctcctccagacaacatcgattccctcg |
118 |
Q |
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|||| |||||| ||||| || |||||||| ||| | | || || ||||||||||||||||||||||||| ||| || || || ||||||||| | |||| |
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| T |
30117546 |
cagaaagacaacgtccgtaatcaacgggagcatcttgttcttcacctcgccaatgctcagatgcgtctcactccgccgccggataacatcgatactctcg |
30117645 |
T |
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| Q |
119 |
atgcctctgt |
128 |
Q |
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| T |
30117646 |
acgccgctgt |
30117655 |
T |
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