View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_high_3 (Length: 502)
Name: NF10049_high_3
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Original strand, 43802117 - 43802596
Alignment:
| Q |
1 |
tagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802117 |
tagacattctactctcactgatgcaccaaccgatcgatccctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacat |
43802216 |
T |
|
| Q |
101 |
gattgccggggcatttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagcta |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802217 |
gattgccggggcatttgaaacttccgcaacggttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagcta |
43802316 |
T |
|
| Q |
201 |
gataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctc |
300 |
Q |
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| T |
43802317 |
gataacgtggttggggcgaacaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctc |
43802416 |
T |
|
| Q |
301 |
cgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaatagg |
400 |
Q |
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| T |
43802417 |
cgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagaaaaaaacaagaataattttgaatttatgggcaatagg |
43802516 |
T |
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| Q |
401 |
aagagattctgcgatctggtctaataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccgcg |
480 |
Q |
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| T |
43802517 |
aagagattctgcgatctggtctaataatgctgaagaattttttccggagagattcgtggataaaagtttagactaccgcg |
43802596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 43812686 - 43813163
Alignment:
| Q |
1 |
tagacattctactctcactgatgcaccaaccgatcgatctctctgacgaaaaaacccatgtcgttgatcgaacaaacataaaggctatatccctagacat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||| |||||||||| ||| ||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
43812686 |
tagacattctactctcactgacgcaccagacgattgatccctctgacgaacaaagccatgtcattgatcgaacaaacataaaggctatagccttagacat |
43812785 |
T |
|
| Q |
101 |
gattgccggggcatttgaaacttccgcaacagttgtggagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatctccaacaagagcta |
200 |
Q |
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||| |||| ||||||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43812786 |
gatcgccgcggcatttgacacttctgcaaccattgtggagtgggctttatccgagctcatgaggcatccaagagtaatgaaaaatctccaacaagagctg |
43812885 |
T |
|
| Q |
201 |
gataacgtggttggggcgaagaaattagtagaagaaaatgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctc |
300 |
Q |
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|||| || |||||| ||| |||||||| || || |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
43812886 |
gatagtgtagttgggatgaacaaattagtggaggagaatgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctg |
43812985 |
T |
|
| Q |
301 |
cgggaccacttgtgccacgcgagtcaacacaagattctacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaatagg |
400 |
Q |
| |
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| |||||||||||||| |||||||||||| | ||| ||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||||||| |
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| T |
43812986 |
caggaccacttgtgccgcgcgagtcaacagaggatgctacagttcatggttatttcataaagaaaaaaacaagagtaattgtgaatttgtgggcaatagg |
43813085 |
T |
|
| Q |
401 |
aagagattctgcgatctggtctaataatgctgaagaattttttccagagagattcgtggataaaagtttagactaccg |
478 |
Q |
| |
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|||||||||| ||| |||||||||||||| |||||||||| |||||||||||| |||||||||| || |||||||| |
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| T |
43813086 |
aagagattctaagatatggtctaataatgccgaagaattttatccagagagatttgtggataaaaacttcgactaccg |
43813163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 29944727 - 29944776
Alignment:
| Q |
138 |
gagtgggctttatcagagctcatgaggcatccaagagtgatgaaaaatct |
187 |
Q |
| |
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|||||||||||||| || || | |||||||||||||||||||||||||| |
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| T |
29944727 |
gagtgggctttatccgaacttttaaggcatccaagagtgatgaaaaatct |
29944776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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