View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049_high_4 (Length: 423)
Name: NF10049_high_4
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_high_4 |
 | |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 2184 - 2584
Alignment:
| Q |
16 |
gtatctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2184 |
gtatctgtgttttcacatcgagaattggttgcagatgaggagatgtcaaatatacttttgacttgccaaacaaattttttttattggaaatatctatata |
2283 |
T |
|
| Q |
116 |
aacgctggtttaggaagaataaacgctggtttatggaaatatcccgttgatcgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2284 |
aacgctggtttaggaagaataaacgctggtttatggaaatatcctgttgaccgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttg |
2383 |
T |
|
| Q |
216 |
tcctattcagatattcacgaccaataagtacagaaaaatggactctccattcattagatagataagataaccaaaacttcagccggcgaacttattccta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2384 |
tcctattcagatattcacgaccaataagtacagaaaaatggactctccattcattagatagataagataaccaaaacttcggccggcgaacttattccta |
2483 |
T |
|
| Q |
316 |
ttcaataagagatctcaatattatgccttgaagaggactcgaacctccacgctatttagcacgagattttgagtctcgcgtgtctaccatttcaccacca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2484 |
ttcaataagagatctcaatattatgccttgaagaggactcgaacctccacactatttagcacgagattttgagtctcgcgtgtctaccatttcaccacca |
2583 |
T |
|
| Q |
416 |
a |
416 |
Q |
| |
|
| |
|
|
| T |
2584 |
a |
2584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 416
Target Start/End: Complemental strand, 82351 - 81951
Alignment:
| Q |
16 |
gtatctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
82351 |
gtatctgtgttttcacatcgagaattggttgcagatgaggagatgtcaaatatacttttgacttgccaaacaaattttttttattggaaatatctatata |
82252 |
T |
|
| Q |
116 |
aacgctggtttaggaagaataaacgctggtttatggaaatatcccgttgatcgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
82251 |
aacgctggtttaggaagaataaacgctggtttatggaaatatcctgttgaccgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttg |
82152 |
T |
|
| Q |
216 |
tcctattcagatattcacgaccaataagtacagaaaaatggactctccattcattagatagataagataaccaaaacttcagccggcgaacttattccta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
82151 |
tcctattcagatattcacgaccaataagtacagaaaaatggactctccattcattagatagataagataaccaaaacttcggccggcgaacttattccta |
82052 |
T |
|
| Q |
316 |
ttcaataagagatctcaatattatgccttgaagaggactcgaacctccacgctatttagcacgagattttgagtctcgcgtgtctaccatttcaccacca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
82051 |
ttcaataagagatctcaatattatgccttgaagaggactcgaacctccacactatttagcacgagattttgagtctcgcgtgtctaccatttcaccacca |
81952 |
T |
|
| Q |
416 |
a |
416 |
Q |
| |
|
| |
|
|
| T |
81951 |
a |
81951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 157 - 416
Target Start/End: Complemental strand, 13230989 - 13230730
Alignment:
| Q |
157 |
tcccgttgatcgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttgtcctattcagatattcacgaccaataagtacagaaaaatgg |
256 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13230989 |
tcccgttgaccgagcctaactctaattgttttgttctgaagcaaacaaagagtggtttgtcctattcagatattcacgaccaataagtacagaaaaatgg |
13230890 |
T |
|
| Q |
257 |
actctccattcattagatagataagataaccaaaacttcagccggcgaacttattcctattcaataagagatctcaatattatgccttgaagaggactcg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13230889 |
actctccattcattagatagataagataaccaaaacttctgctggcgaacttattcctattcaataagagatctcaatattatgccttgaagaggactcg |
13230790 |
T |
|
| Q |
357 |
aacctccacgctatttagcacgagattttgagtctcgcgtgtctaccatttcaccaccaa |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13230789 |
aacctccacgctatttagcacgagattttgagtctcgcgtgtctaccatttcaccaccaa |
13230730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 13231451 - 13231331
Alignment:
| Q |
16 |
gtatctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatata |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
13231451 |
gtatctgtgttttcacatcgagaattggttgcagatgaggagatgtcaaatagacttttgacttgccaaacaaaaaaaatttattggaaatatctaaata |
13231352 |
T |
|
| Q |
116 |
aacgctggtttaggaagaata |
136 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
13231351 |
aaccctggtttaggaagaata |
13231331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 27427123 - 27427003
Alignment:
| Q |
16 |
gtatctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatata |
115 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |
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|
| T |
27427123 |
gtatctgtgttttcacatcaagaattggttgcagatgaggagatgtcaaatatacttttgacttgtcaaacaaattttttttattggaaatatctaaata |
27427024 |
T |
|
| Q |
116 |
aacgctggtttaggaagaata |
136 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27427023 |
aacgctggtttaggaagaata |
27427003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 40511194 - 40511067
Alignment:
| Q |
160 |
cgttgatcgagcctaactctaattgttttgttctgaagcaaacaaagag----------tggtttgtcctattcagatattcacgaccaataagtacaga |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||| ||||||||||||| | |
|
|
| T |
40511194 |
cgttgatcgagcctaactctaattgttttgttctaaagcaaacaaagagattcacgggatggtttgtcttattcacatattcactaccaataagtacata |
40511095 |
T |
|
| Q |
250 |
aaaatggactctccattcattagataga |
277 |
Q |
| |
|
|||||| |||||||||| |||||||||| |
|
|
| T |
40511094 |
aaaatgaactctccatttattagataga |
40511067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 40511653 - 40511541
Alignment:
| Q |
23 |
tgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatataaacgctg |
122 |
Q |
| |
|
|||||| ||| ||||||||| |||||| |||| | ||||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
40511653 |
tgtttttacaacgagaattggttgcaggtgagaaaatgtcaaatatactttttacttgccaaacaa-aaaataatattggaaatatctaaataaacgctg |
40511555 |
T |
|
| Q |
123 |
gtttaggaagaata |
136 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40511554 |
gtttaggaagaata |
40511541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 328 - 412
Target Start/End: Complemental strand, 195253 - 195169
Alignment:
| Q |
328 |
tctcaatattatgccttgaagaggactcgaacctccacgctatttagcacgagattttgagtctcgcgtgtctaccatttcacca |
412 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
195253 |
tctccatattatgccttgaagaggactcgaacctccacgctcttcagcacgagattttgagtctcgcgtgtctaccatttcacca |
195169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 18354174 - 18354295
Alignment:
| Q |
16 |
gtatctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgcc-aaacaagannnnnnnattggaaatatctatat |
114 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||| | |||||||||||||| || |
|
|
| T |
18354174 |
gtatctgtgttttcacatcgagaattggttgcagatgaggagatgtcaaatagacttttgacttgccaaaacaaaaaaaatttattggaaatatctaaat |
18354273 |
T |
|
| Q |
115 |
aaacgctggtttaggaagaata |
136 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
18354274 |
aaaccctggtttaggaagaata |
18354295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 34150983 - 34151099
Alignment:
| Q |
20 |
ctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaatatacttttgacttgccaaacaagannnnnnnattggaaatatctatataaacg |
119 |
Q |
| |
|
||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||||| | |
|
|
| T |
34150983 |
ctgtgttttgacatagagaattggttgcatatgaggagatgtcaaatatacttttgacttgccaaacaaaaaacaattattgaaaatatctaaataaatg |
34151082 |
T |
|
| Q |
120 |
ctggtttaggaagaata |
136 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
34151083 |
atggtttaagaagaata |
34151099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 368 - 416
Target Start/End: Complemental strand, 203 - 155
Alignment:
| Q |
368 |
tatttagcacgagattttgagtctcgcgtgtctaccatttcaccaccaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
203 |
tatttagcacgagattttgagtctcgcgtgtctaccatttcaccaccaa |
155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Original strand, 27153182 - 27153247
Alignment:
| Q |
71 |
ttttgacttgccaaacaagannnnnnnattggaaatatctatataaacgctggtttaggaagaata |
136 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
27153182 |
ttttgacttgccaaacaaaaaaaatttattggaaatatctaaataaacactggtttaggaagaata |
27153247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 4579 - 4625
Alignment:
| Q |
19 |
tctgtgttttcacatcgagaattgattgcagatgaggagatgtcaaa |
65 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
4579 |
tctgtgttttcacaccgagaattctttgcagatgaagagatgtcaaa |
4625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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