View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049_low_1 (Length: 1017)
Name: NF10049_low_1
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_1 |
 | |
|
| [»] scaffold0004 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 917; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 917; E-Value: 0
Query Start/End: Original strand, 1 - 1003
Target Start/End: Original strand, 48191518 - 48192520
Alignment:
| Q |
1 |
tatttttattctttctttgttggcttt-aaaaacacacttgatgtctttaatggaacatcta-ttcctgtcactccaatgtgagttgttgattttgttgg |
98 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48191518 |
tatttttattctttctttgttggcttttaaaaacacacttgatgtctttaatggaacatccagttcctgtcactccaatgtgagttgttgaatttgttgg |
48191617 |
T |
|
| Q |
99 |
attcacaatcactgttgttgatttattttgtccgacaaaatagaaaaataatgcaggcggaaagaaaaaagagaggtgactgcatatagtttgcattcca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48191618 |
attcacaatcactgttgttgatttattttgtccgacaaaatagaaaaataatgcaggcggaaagaaaaaagagaggtgactgcatatagtttgcattcca |
48191717 |
T |
|
| Q |
199 |
agataaatgattacattgagcaagtaaaatgagaaaaacagctcatatactttcaagtgccatacacaggtaagagtatatgagttcataaagaacaaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48191718 |
agataaatgattacattgagcaagtaaaatgagaaaaacagctcatatacattcaagtgccatacacaggtaagagtatatgagttcataaagaacaaa- |
48191816 |
T |
|
| Q |
299 |
tgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccatattgttcttgatgcagttgattccaaaca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48191817 |
tgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccatattgttcttgatacagttgattccaaaca |
48191916 |
T |
|
| Q |
399 |
atcaaataatgctgcataagaacatagagcttcaagtagtctctccatcagagtcgaactgtttagatttgagtcctgttcggttacaaccatgactttc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
48191917 |
atcaaataatgctgcataagaacatagagcttcaagtagtctctccatcagagtcgaactgttttgattcgagtcctgttccgttacaaccatgactttt |
48192016 |
T |
|
| Q |
499 |
ggtgataaactccataaagcattgcgaaaattctccacattcattgaatcagatgaagatgctgtcgacgatgatgatgttgaattgggacttggactat |
598 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48192017 |
ggtgataaactccataaagcattgagaaaattctccacattcattgaatcagatgaagatgctgtcgacgatgatgatgttgaactgggacttggactat |
48192116 |
T |
|
| Q |
599 |
agccattaaccatatctttttcaaacaaatcacctaattatgtgttttggttcataagcatggctttttgcaggtgattcatcatccaaggccaaaaggg |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48192117 |
agccattaaccatatctttttcaaacaaatcacctaatgatgtgttttggttcataagcatggctttttgcaggtgattcatcatccaaggcc-aaaggg |
48192215 |
T |
|
| Q |
699 |
aatgtaacttcagaatagggtctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaag |
798 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192216 |
aatgtaactgcagaataggatctcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaag |
48192315 |
T |
|
| Q |
799 |
taagggaaaagttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttt |
898 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192316 |
taagggaaaagttcaaagaaaaacttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttt |
48192415 |
T |
|
| Q |
899 |
tatgtatcctatcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgt |
998 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48192416 |
tatgtatcctatcagtaagtgcttcagtgaaatatgcagcaattctctgcatagtgtcttcatcaggaattgcaagctgagaaatctgttcaagtgttgt |
48192515 |
T |
|
| Q |
999 |
gtttg |
1003 |
Q |
| |
|
||||| |
|
|
| T |
48192516 |
gtttg |
48192520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 23910074 - 23910175
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata |
370 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
23910074 |
agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaacgaatactcattaccata |
23910173 |
T |
|
| Q |
371 |
tt |
372 |
Q |
| |
|
|| |
|
|
| T |
23910174 |
tt |
23910175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 34266247 - 34266328
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaa |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
34266247 |
agagtatatgagttcatgaagaacaaaatgagtagtagtcaagtaggaaaataaaagtatatgtaaatcgacaatgatgaaa |
34266328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 721 - 1003
Target Start/End: Original strand, 2086335 - 2086617
Alignment:
| Q |
721 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatctgtcaaaatatatgctaccttcaagtaagggaaaagttcaaagaaaa |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2086335 |
tcaattatatgaaccattttctcaccttccatagattcaacaatagcttgatttgtcaaaatatatgctaccttcaaaaaagggaaaagctcaaagaaaa |
2086434 |
T |
|
| Q |
821 |
acttctgaaccataatttcttcagaaagcataataattcttgtggaatttaagcctctatggagtccaggccaagttttatgtatcctatcagtaagtgc |
920 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||| |
|
|
| T |
2086435 |
atttctgaaccataatttcttcagaaagcataataattcttgtggaatttaaggctctatggagtcctggccaggttttgagtatcctatcagcaagtgc |
2086534 |
T |
|
| Q |
921 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggaattgcaagctgagaaatctgttcaagtgttgtgtttg |
1003 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2086535 |
ttcagtgaaatatgcagcaattctctgcatagtgtctccatcaggagttgcaagctgagaaatctgttcaagtgttgtgtttg |
2086617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 372 - 675
Target Start/End: Original strand, 2085686 - 2085989
Alignment:
| Q |
372 |
tgttcttgatgcagttgattccaaacaatcaaataatgctgcataagaacatagagcttcaagtagtctctccatcagagtcgaactgtttagatttgag |
471 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||| || |||| ||| |
|
|
| T |
2085686 |
tgttcttgacacagttgattccaaacaatcaaacaatgctgcataagaatatagagcttcaagcagcctctccatcagagtcgaaccattatgattcgag |
2085785 |
T |
|
| Q |
472 |
tcctgttcggttacaaccatgactttcggtgataaactccataaagcattgcgaaaattctccacattcattgaatcagatgaagatgctgtcgacgatg |
571 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
2085786 |
tcctgttcggtaacaaccatgacttttggtgacaaactccataaagcattgagaaaactctccacattcattgaagcagatgaagatgctggcgacgacg |
2085885 |
T |
|
| Q |
572 |
atgatgttgaattgggacttggactatagccattaaccatatctttttcaaacaaatcacctaattatgtgttttggttcataagcatggctttttgcag |
671 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2085886 |
atgatgttgaatcgggacttggactatagccattaaccatatctttttcaagcaaatcacctaatgatgtgttttggttcataagcatggctttttgcag |
2085985 |
T |
|
| Q |
672 |
gtga |
675 |
Q |
| |
|
|||| |
|
|
| T |
2085986 |
gtga |
2085989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 49 - 373
Target Start/End: Original strand, 2084928 - 2085244
Alignment:
| Q |
49 |
aatggaacatcta-ttcctgtcactccaatgtgagttgttgattttgttggattcacaatcactgttgttgatttattttgtccgacaaaatagaaaaat |
147 |
Q |
| |
|
||||||||||||| ||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| | || |||| ||||| |
|
|
| T |
2084928 |
aatggaacatctagttcttgtcactctaatgtgagttgttgaatttgttggattcacaatcactaatgttgatttattttctcc-agaacataggaaaat |
2085026 |
T |
|
| Q |
148 |
aatgcaggcggaaagaaaaaagagaggtgactgcatatagtttgcattccaagataaatgattacattgagcaagtaaaatgagaaaaacagctcatata |
247 |
Q |
| |
|
||||||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2085027 |
aatgcagatgtagagaaaag-gagaggtgactgcatatagtttgcattccaagataaatgattacattgagcaagtaaaatgagaaaaatagctcatata |
2085125 |
T |
|
| Q |
248 |
ctttcaagtgccatacacaggtaagagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatga |
347 |
Q |
| |
|
| ||||||| |||| |||||| |||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2085126 |
cattcaagtaccat--acaggttagagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaatg- |
2085222 |
T |
|
| Q |
348 |
tgaaatgaatactcattaccatattg |
373 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2085223 |
----atgaatactcattaccatattg |
2085244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 38041849 - 38041950
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata |
370 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38041849 |
agagtataggagttcatgaagaacaaaatgagtagtagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata |
38041948 |
T |
|
| Q |
371 |
tt |
372 |
Q |
| |
|
|| |
|
|
| T |
38041949 |
tt |
38041950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 271 - 369
Target Start/End: Original strand, 2367209 - 2367307
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccat |
369 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2367209 |
agagtataggagttcatgaagaacaagatgagtagcaatcaagtaggaaaataaaagtatatctaaattgacaatgatgaaatgaatactcattaccat |
2367307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 673 - 716
Target Start/End: Original strand, 2086037 - 2086080
Alignment:
| Q |
673 |
tgattcatcatccaaggccaaaagggaatgtaacttcagaatag |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2086037 |
tgattcatcatccaaggccaaaagggaatgtaactgcagaatag |
2086080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 1691785 - 1691886
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata |
370 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1691785 |
agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaacgaatactcattaccata |
1691884 |
T |
|
| Q |
371 |
tt |
372 |
Q |
| |
|
|| |
|
|
| T |
1691885 |
tt |
1691886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 271 - 372
Target Start/End: Original strand, 22759412 - 22759513
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccata |
370 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22759412 |
agagtataggagttcatgaagaacaaaatgagtagcagtcaagtgggaaaaaaaaagtatctctaaattgacaatgatgatatgaatactcattaccata |
22759511 |
T |
|
| Q |
371 |
tt |
372 |
Q |
| |
|
|| |
|
|
| T |
22759512 |
tt |
22759513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 271 - 352
Target Start/End: Complemental strand, 33297932 - 33297851
Alignment:
| Q |
271 |
agagtatatgagttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaa |
352 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33297932 |
agagtataggagttcatgaagaacaaaatgagtagcagtcaagtaggaaaataaaagtatctgtaaattgacaatgatgaaa |
33297851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 77389 - 77323
Alignment:
| Q |
306 |
cagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattaccatatt |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
77389 |
cagtcaagtaggaaaataaaagtatctctaaattgacaatgatgaaatgaatactcagtatcatatt |
77323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 42299162 - 42299248
Alignment:
| Q |
281 |
agttcataaagaacaaaatgagtcgcagtcaagtacgaaaataaaagtatctctaaattgacaatgatgaaatgaatactcattacc |
367 |
Q |
| |
|
||||||| ||||||||||||||| | |||| || | ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42299162 |
agttcatgaagaacaaaatgagtaggagtccagcagaaaaataaaagtatctttaaattgacaatgatgaaatgaatactcattacc |
42299248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 385 - 527
Target Start/End: Complemental strand, 29140809 - 29140667
Alignment:
| Q |
385 |
gttgattccaaacaatcaaataatgctgcataagaacatagagcttcaagtagtctctccatcagagtcgaactgtttagatttgagtcctgttcggtta |
484 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||| ||||| || ||| | | | || | || |||| ||||| ||||| |||| |
|
|
| T |
29140809 |
gttgattccaaacaatcaaatagtgctgcataagagtgtagagcttccagtagcctgtccgtaaaatgtgagccattatgattagagtcttgttctgtta |
29140710 |
T |
|
| Q |
485 |
caaccatgactttcggtgataaactccataaagcattgcgaaa |
527 |
Q |
| |
|
||||||| || || |||||||||||||| || |||||| |||| |
|
|
| T |
29140709 |
caaccatcacctttggtgataaactccacaatgcattgagaaa |
29140667 |
T |
|
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