View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_10 (Length: 392)

Name: NF10049_low_10
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_10
NF10049_low_10
[»] chr6 (11 HSPs)
chr6 (12-383)||(30955204-30955575)
chr6 (12-383)||(30944944-30945315)
chr6 (143-383)||(31145397-31145637)
chr6 (143-383)||(31171710-31171950)
chr6 (143-361)||(31189455-31189673)
chr6 (144-361)||(31224476-31224693)
chr6 (129-361)||(30992453-30992685)
chr6 (129-383)||(30960949-30961203)
chr6 (143-383)||(31201262-31201502)
chr6 (143-383)||(31214185-31214425)
chr6 (143-358)||(31229759-31229974)
[»] chr7 (9 HSPs)
chr7 (285-363)||(31618457-31618535)
chr7 (288-361)||(31438982-31439055)
chr7 (285-361)||(31541209-31541285)
chr7 (279-351)||(31585591-31585663)
chr7 (282-357)||(31608444-31608519)
chr7 (285-363)||(31572804-31572881)
chr7 (150-238)||(31576052-31576140)
chr7 (150-190)||(31585462-31585502)
chr7 (150-238)||(31604718-31604806)
[»] chr1 (9 HSPs)
chr1 (276-357)||(9233930-9234011)
chr1 (129-196)||(49215559-49215626)
chr1 (279-361)||(49725148-49725230)
chr1 (279-361)||(49728570-49728652)
chr1 (276-357)||(9384383-9384464)
chr1 (129-166)||(49714567-49714604)
chr1 (126-174)||(9495608-9495656)
chr1 (285-357)||(11011057-11011129)
chr1 (129-197)||(49683286-49683354)
[»] chr4 (1 HSPs)
chr4 (282-361)||(15063329-15063408)
[»] chr8 (1 HSPs)
chr8 (282-363)||(44035640-44035721)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 30955575 - 30955204
Alignment:
Q  12 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30955575 atggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtattaacatcaa 30955476  T
Q  112 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctgg 211  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955475 tattgtttctcactccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctgg 30955376  T
Q  212 agctacatatccgactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955375 agctacatatccgactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacat 30955276  T
Q  312 aaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955275 aaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 30955204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 30945315 - 30944944
Alignment:
Q  12 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 111  Q
    |||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30945315 atggccatcactatgtcagatctcaaatcactatccgtttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgttttaacatcaa 30945216  T
Q  112 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctgg 211  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945215 tattgtttctcactcccaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctgg 30945116  T
Q  212 agctacatatccgactgttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacat 311  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30945115 agctacatatccgactgttcctcttgcatttgacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacat 30945016  T
Q  312 aaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||    
T  30945015 aaattttcatctaaaagaatgttatgcggttttatgtcaaaatgtaaaatccggatattacaccccctatgc 30944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 383
Target Start/End: Original strand, 31145397 - 31145637
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31145397 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31145496  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31145497 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31145596  T
Q  343 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31145597 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 143 - 383
Target Start/End: Original strand, 31171710 - 31171950
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31171710 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31171809  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31171810 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31171909  T
Q  343 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31171910 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31171950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 143 - 361
Target Start/End: Original strand, 31189455 - 31189673
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31189455 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31189554  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    | |||  | ||| |||||||||| |   ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  31189555 gtcatcgaaataatgctctctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 31189654  T
Q  343 ttatatcaaaatgtaaaat 361  Q
    |||| || |||||||||||    
T  31189655 ttatgtcgaaatgtaaaat 31189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 144 - 361
Target Start/End: Complemental strand, 31224693 - 31224476
Alignment:
Q  144 atcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||  || ||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgttcctctttgatctg 31224594  T
Q  244 acatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttt 343  Q
    ||||  | | | |||| ||||||  |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  31224593 acattgaaacaatgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttt 31224494  T
Q  344 tatatcaaaatgtaaaat 361  Q
    ||| ||||||||||||||    
T  31224493 tatgtcaaaatgtaaaat 31224476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 129 - 361
Target Start/End: Complemental strand, 30992685 - 30992453
Alignment:
Q  129 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactg 228  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||    
T  30992685 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattg 30992586  T
Q  229 ttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaag 328  Q
    | ||||||  ||  |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  30992585 tccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaag 30992486  T
Q  329 aatgttatgtggttttatatcaaaatgtaaaat 361  Q
    |||||||||||||||||| ||||||||||||||    
T  30992485 aatgttatgtggttttatgtcaaaatgtaaaat 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 129 - 383
Target Start/End: Complemental strand, 30961203 - 30960949
Alignment:
Q  129 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactg 228  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || | ||    
T  30961203 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttcaggagctacataccccattg 30961104  T
Q  229 ttcctcttgcatttgacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaag 328  Q
    | ||||||  ||  |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||    
T  30961103 tccctctttgatccgacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaag 30961004  T
Q  329 aatgttatgtggttttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    |||||||||||||||||| |||||||||||||| || |||  |||||| ||||||    
T  30961003 aatgttatgtggttttatgtcaaaatgtaaaattcgagtagcacatcctctatgc 30960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 143 - 383
Target Start/End: Original strand, 31201262 - 31201502
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |  || ||||||  || |    
T  31201262 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctctttgatct 31201361  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    |||||  | ||| ||||||| |||    |||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  31201362 gacatcgaaataatgctctcgttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggtt 31201461  T
Q  343 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    |||| || ||||||||||| || ||  ||||||| ||||||    
T  31201462 ttatgtcgaaatgtaaaattcgagtggtacatcctctatgc 31201502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 143 - 383
Target Start/End: Complemental strand, 31214425 - 31214185
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||||| | ||||||||| |  || |||||||||||||| |  |||||||| |||  |    
T  31214425 catcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctctagcacct 31214326  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    |||||  | ||| |||| ||||||| |||||| ||  ||||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||    
T  31214325 gacatcgaaataatgctttctttcttgagacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggtt 31214226  T
Q  343 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 383  Q
    ||||||||||||||||||| || ||| | ||||| ||||||    
T  31214225 ttatatcaaaatgtaaaattcgagtactgcatcctctatgc 31214185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 143 - 358
Target Start/End: Complemental strand, 31229974 - 31229759
Alignment:
Q  143 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 242  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||| | | |||||||||  || ||||||||||| || | ||| ||||| || | |    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctctagcgtct 31229875  T
Q  243 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 342  Q
    |||||  | ||| ||||||||||||   | || ||  ||| ||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||    
T  31229874 gacatagaaataatgctctctttcttatggcaaagtcttgaaagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtt 31229775  T
Q  343 ttatatcaaaatgtaa 358  Q
    | || |||||||||||    
T  31229774 tgatgtcaaaatgtaa 31229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 285 - 363
Target Start/End: Original strand, 31618457 - 31618535
Alignment:
Q  285 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 363  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||| |||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 31618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 288 - 361
Target Start/End: Complemental strand, 31439055 - 31438982
Alignment:
Q  288 ccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 361  Q
    |||||||| || || |||||||| |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  31439055 ccaaaatcagatatttttggacaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 31438982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 31541209 - 31541285
Alignment:
Q  285 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 361  Q
    ||||||||||| || || || || || ||||||||||| ||||||||||| |||||||| ||||||| ||| |||||    
T  31541209 agtccaaaatcagagattttggggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaat 31541285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 31585591 - 31585663
Alignment:
Q  279 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa 351  Q
    ||||| ||||||||||| || || |||||||| |||| |||||| ||||||||||| || ||||| |||||||    
T  31585591 tttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaa 31585663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 31608444 - 31608519
Alignment:
Q  282 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 357  Q
    |||||||||||||| || || |||||||| || | |||||| ||||||||||| || ||||| ||||||| |||||    
T  31608444 gcaagtccaaaatcagatatttttggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgta 31608519  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 363
Target Start/End: Complemental strand, 31572881 - 31572804
Alignment:
Q  285 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 363  Q
    ||||||||||| || || ||||| || |||| |||||| ||||||||||| || ||||||||||||| ||| |||||||    
T  31572881 agtccaaaatcagagatttttgggcaaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatcc 31572804  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 31576052 - 31576140
Alignment:
Q  150 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 238  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31576052 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31576140  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 31585462 - 31585502
Alignment:
Q  150 ccataactataaacatcagacttgtgtgaaactcctccaaa 190  Q
    ||||||||||| |||||||||||||| |||||||| |||||    
T  31585462 ccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 31604718 - 31604806
Alignment:
Q  150 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 238  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31604718 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31604806  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 9234011 - 9233930
Alignment:
Q  276 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 357  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || |||||||||||||    
T  9234011 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9233930  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 49215626 - 49215559
Alignment:
Q  129 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtct 196  Q
    ||||| ||||||| |||||||||||||||||||||||| || || ||||| || || ||||| |||||    
T  49215626 accatttctaaaaccatcattccataactataaacatctgatttatgtgacaccccaccaaaatgtct 49215559  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 49725230 - 49725148
Alignment:
Q  279 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 361  Q
    ||||||||||||||||| |||||  | ||    ||||| ||||| |||||||||||||| |||||||| |||||||| |||||    
T  49725230 tttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaat 49725148  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 361
Target Start/End: Complemental strand, 49728652 - 49728570
Alignment:
Q  279 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 361  Q
    ||||||||||||||||| |||| ||| ||||| ||||  || ||||  |  || ||||| |||||||||||||||||||||||    
T  49728652 tttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat 49728570  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 357
Target Start/End: Original strand, 9384383 - 9384464
Alignment:
Q  276 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 357  Q
    |||||||||||||||||||| |||| |||||||   || | ||| |||| |||||| ||||| || || |||||||||||||    
T  9384383 agctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9384464  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 49714604 - 49714567
Alignment:
Q  129 accatctctaaaagcatcattccataactataaacatc 166  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49714604 accatttctaaaaccatcattccataactataaacatc 49714567  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 9495656 - 9495608
Alignment:
Q  126 ccgaccatctctaaaagcatcattccataactataaacatcagacttgt 174  Q
    |||||||||||||  | || ||||||| |||||||||||||||||||||    
T  9495656 ccgaccatctctagcaacaacattccaaaactataaacatcagacttgt 9495608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 357
Target Start/End: Original strand, 11011057 - 11011129
Alignment:
Q  285 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 357  Q
    ||||||||||| ||||  ||||||   ||||||||||| | |||||||||||| || ||||||||||| ||||    
T  11011057 agtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 49683354 - 49683286
Alignment:
Q  129 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaactcctccaaattgtcta 197  Q
    ||||| ||||||| ||||||||||||||| || ||||| || |||||||| || || ||||| ||||||    
T  49683354 accatttctaaaaccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtcta 49683286  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 15063408 - 15063329
Alignment:
Q  282 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 361  Q
    ||||| |||||||| || || ||||| || |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  15063408 gcaagaccaaaatcagatatttttgggcaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 15063329  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 363
Target Start/End: Complemental strand, 44035721 - 44035640
Alignment:
Q  282 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 363  Q
    |||||||||||||| || ||||| ||||   || |||| || |||||||||||||||||||| || || ||||| |||||||    
T  44035721 gcaagtccaaaatcagatatcttgggacggtaagtttcgtccaaaagaatgttatgtggtttaatgtcgaaatgaaaaatcc 44035640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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