View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_11 (Length: 390)
Name: NF10049_low_11
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 47310114 - 47309738
Alignment:
| Q |
8 |
cacgttggaaataattttgttcgtcattcttgcttgattgtaatctactgaaatctttagaacatgatt---------aattggtctaacaaaattatgt |
98 |
Q |
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| T |
47310114 |
cacgttggaaataattttgttcgtcattcttgcttgattgtaatctaatgaaatctttagaacatgattcacatgattaattggtctaacaaaattatgt |
47310015 |
T |
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| Q |
99 |
gcatgcaactccttattcctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttcctctccaaccaacaccatgatttaa |
198 |
Q |
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| T |
47310014 |
tcatgcaactccttattgctccacgtccacaaacaatgacgagctatccccaaatatctctccaatctccatttcctctccaaccaacaccatgatttaa |
47309915 |
T |
|
| Q |
199 |
attgaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttaatttggaatagcacttttccacagctgcagcacccccttaa |
298 |
Q |
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| T |
47309914 |
atttaaaattaatccaattatccaagttacccataattaaagaattgattgttatcttcatttggaatagcacttttccacagctgcagcacccccttaa |
47309815 |
T |
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| Q |
299 |
tgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagacaacaaggagtggtaataac |
375 |
Q |
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| T |
47309814 |
tgcatgtaaacaagtttcctccacgtcatcgcaataaacacacatttgagggagagacaccaaggagtggtaataac |
47309738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 21310297 - 21310428
Alignment:
| Q |
73 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagcta-tccccaaatatctctccaatctccatt |
171 |
Q |
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| T |
21310297 |
gattaattggtctaacaaaatcattttcatgcaactcctaattcctccatgtccacaaacaatggcatgttattgcccaaatatctttccaatctctatc |
21310396 |
T |
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| Q |
172 |
tcctctccaaccaacaccatgatttaaattga |
203 |
Q |
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| T |
21310397 |
ccccctccaaccagcatcatggcttaaattga |
21310428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 50564543 - 50564444
Alignment:
| Q |
73 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgacgagctatc-cccaaatatctctccaatctccatt |
171 |
Q |
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||||| ||||||||||||| |||| | |||||||||||||||||||||| ||| |||||||||| | | | || ||||||||||| ||||||||||||| |
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| T |
50564543 |
gattagttggtctaacaaatttattttcatgcaactccttattcctccatgtcgacaaacaatggcatgttgtcgcccaaatatctttccaatctccatt |
50564444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 45089281 - 45089346
Alignment:
| Q |
73 |
gattaattggtctaacaaaattatgtgcatgcaactccttattcctccacgtccacaaacaatgac |
138 |
Q |
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|||||||| |||||||||||| | ||||||||||||||||||||||||| || |||||||||| |
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| T |
45089281 |
gattaattcatctaacaaaattgcattcatgcaactccttattcctccacgttcataaacaatgac |
45089346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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