View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_12 (Length: 377)
Name: NF10049_low_12
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 32096717 - 32096357
Alignment:
| Q |
1 |
tcaatgagaggttcattattttaagatcattggttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagct |
100 |
Q |
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| T |
32096717 |
tcaatgaaaggttcattattttaagatcattggttccattcgtgacaaaaatggacaaggcttctatattaggtgacactattgagtacttgaaacagct |
32096618 |
T |
|
| Q |
101 |
aagaagaaagatacaagatcttgaaacacgtaaccgtcagatagagattgaacaacaaagtaggagtggtgtaacggttttggtgggtccaacagataag |
200 |
Q |
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| T |
32096617 |
aagaagaaagatacaagatcttgaaacacgtaaccgtcagatagagactgaacaacaaagtaggagtggtgtaacggttttggtgggtccaacagataag |
32096518 |
T |
|
| Q |
201 |
aaaaaggtgaggattgtggaagagtgtggagccacgagagcgaaagcagttgagacggaggttgtttcgtcggttcaggtttcgattattgagagtgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32096517 |
aaaaaggtgaggattgtggaagagtgtggagccacgagagcgaaagcagttgagacggaggttgtttcgtcggttcaggtttcgattattgagagtgatg |
32096418 |
T |
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| Q |
301 |
ctttgttggagattgagtgtttgcatagagaaggattgttgcttgatgttatggtaatgtt |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32096417 |
ctttgttggagattgagtgtttgcatagagaaggattgttgcttgacgttatggtaatgtt |
32096357 |
T |
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