View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049_low_13 (Length: 366)
Name: NF10049_low_13
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 138 - 261
Target Start/End: Original strand, 20379899 - 20380022
Alignment:
| Q |
138 |
tatagtaatcaaattatttgactatcattatcacgaggcaaaaaccaagtgcagccaccacttctagcatgggctccattttcccaacaatttccaccta |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20379899 |
tatagtaatcaaattatttgactatcattatcacgaggcaaaaaccaagtgcagccaccacttctagcatgggctccattttcccaacaatttccaccta |
20379998 |
T |
|
| Q |
238 |
ataaaataagtaggaaacaacctc |
261 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
20379999 |
ataaaataagtaggaaacaacctc |
20380022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 20379743 - 20379857
Alignment:
| Q |
16 |
actaatacttctacgaatgtgtaatctaaccttttctttttactctttagctaactatattacttaagataattttttatctctaataaattaaagtcat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20379743 |
actaatacttctacgaatgtgtaatctaaccttttctttttactctttagctaactacattacttaagataattttttatctctaataaattaaagtcat |
20379842 |
T |
|
| Q |
116 |
taagacatgatatgt |
130 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20379843 |
taagacatgatatgt |
20379857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 20380051 - 20380108
Alignment:
| Q |
299 |
taccatcttcctctataaactaaatcaaatctgactcattcattcttatgtacctttg |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20380051 |
taccatcttcctctataaactaaatcaaatctgactcattcattcttatgtccctttg |
20380108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 20412932 - 20413032
Alignment:
| Q |
148 |
aaattatttgactatcattatcacgaggcaaaaacc-aagtgcagccaccacttctagcatgggctccattttc-ccaacaatttccacctaataaaata |
245 |
Q |
| |
|
||||||||||||||||||||||| || ||| |||| ||| |||| ||||| |||||||||||||||| |||| ||| | ||||||||||| |||||| |
|
|
| T |
20412932 |
aaattatttgactatcattatcattagacaataaccaaagaacagctaccacctctagcatgggctccactttctccactactttccacctaagaaaata |
20413031 |
T |
|
| Q |
246 |
a |
246 |
Q |
| |
|
| |
|
|
| T |
20413032 |
a |
20413032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University