View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10049_low_16 (Length: 337)
Name: NF10049_low_16
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_16 |
 | |
|
| [»] scaffold0430 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 51184552 - 51184241
Alignment:
| Q |
9 |
gagaagcagagacagtagatattgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacag |
108 |
Q |
| |
|
||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
51184552 |
gagaatcaaagacagtagatattgatttttatgaaagaaaagattagacaattaagactagtttggttttatactgtgactttgcaggtttccaagacag |
51184453 |
T |
|
| Q |
109 |
tggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggtta |
208 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51184452 |
tagatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggtta |
51184353 |
T |
|
| Q |
209 |
taggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51184352 |
taggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaa |
51184253 |
T |
|
| Q |
309 |
gtgagtgtattt |
320 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51184252 |
gtgagtgtattt |
51184241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 320
Target Start/End: Original strand, 14172579 - 14172870
Alignment:
| Q |
29 |
attgatttgtatgaaagaaaagattagacaattaagactagtttggttttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaa |
128 |
Q |
| |
|
|||||| |||||||||| ||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14172579 |
attgatctgtatgaaaggaaagactaaacaattaagactattttggttttatactgcgattttgcaggtttccaagacagtagatattgtaaaggcgaaa |
14172678 |
T |
|
| Q |
129 |
gggggaaaggttacaagagaaccagggtctgtcaaaggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttgagcttttggaga |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14172679 |
gggggaaaggttacaagagaaccagggtctgtcataggtggctctatagtaactgcttccgttgaagatcctagtggttataggtttaagcttttggaga |
14172778 |
T |
|
| Q |
229 |
gaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
320 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14172779 |
gaagaactactcgtgaacccttatgcaaagtgatgcttcgagtaggtgaccttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
14172870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 320
Target Start/End: Original strand, 48010932 - 48011035
Alignment:
| Q |
217 |
agcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcgaccttgatcgtgtcatagccttctatgaaaaagtgagtgt |
316 |
Q |
| |
|
||||||||| | |||||||| | || |||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||| | |
|
|
| T |
48010932 |
agcttttggggtgaagacctgctcgcgaacccctatgcaaagtgatgcttcaagtaggcggccttgatcgtgtcgtagccttctatgaataagtgagttt |
48011031 |
T |
|
| Q |
317 |
attt |
320 |
Q |
| |
|
|||| |
|
|
| T |
48011032 |
attt |
48011035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 77 - 320
Target Start/End: Original strand, 807 - 1050
Alignment:
| Q |
77 |
ttatactgcgactttgcaggtttccaagacagtggatattgtaaaggcgaaagggggaaaggttacaagagaaccagggtctgtcaaaggtggctctata |
176 |
Q |
| |
|
|||||||| || ||| |||||| ||||||| || |||||||||||| ||| |||||||||||| ||||||| | | |||| |||| ||| |||| | |
|
|
| T |
807 |
ttatactgtgatttttcaggttgccaagacggtaaatattgtaaaggaaaaatggggaaaggttatgagagaactggagcctgttaaagatggttctaca |
906 |
T |
|
| Q |
177 |
gtaactgcttccgttgaagatcctagtggttataggtttgagcttttggagagaagacctacccgtgaacccttatgcaaagtgatgcttcgagtaggcg |
276 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| || || | |
|
|
| T |
907 |
gtaactgcttttattgaagatcctagtggtgataggtttgagcttttggggagaagacttactcgtgaacccttatgcaaagtgatgcttcaagcagaca |
1006 |
T |
|
| Q |
277 |
accttgatcgtgtcatagccttctatgaaaaagtgagtgtattt |
320 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1007 |
accttgattgtgtcatagccttctatgaaaaagtgagtgtattt |
1050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University