View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10049_low_18 (Length: 304)

Name: NF10049_low_18
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10049_low_18
NF10049_low_18
[»] chr1 (6 HSPs)
chr1 (217-289)||(6154344-6154416)
chr1 (149-220)||(18431528-18431607)
chr1 (1-53)||(18431702-18431754)
chr1 (224-293)||(22787946-22788019)
chr1 (1-53)||(6154642-6154694)
chr1 (183-220)||(22788280-22788317)
[»] chr5 (7 HSPs)
chr5 (217-289)||(424261-424333)
chr5 (138-189)||(424691-424742)
chr5 (1-102)||(424773-424875)
chr5 (140-189)||(18113686-18113735)
chr5 (1-51)||(18113827-18113877)
chr5 (261-291)||(18108587-18108617)
chr5 (220-256)||(18113296-18113332)
[»] chr3 (6 HSPs)
chr3 (224-294)||(52118779-52118853)
chr3 (224-294)||(26557106-26557180)
chr3 (217-256)||(39163818-39163857)
chr3 (183-220)||(26555662-26555699)
chr3 (183-216)||(52118481-52118514)
chr3 (12-52)||(26555493-26555533)
[»] chr2 (2 HSPs)
chr2 (145-220)||(16916261-16916347)
chr2 (1-53)||(16916433-16916485)
[»] chr6 (5 HSPs)
chr6 (149-220)||(5013975-5014054)
chr6 (217-263)||(14434623-14434669)
chr6 (183-220)||(16693155-16693192)
chr6 (217-298)||(20737754-20737835)
chr6 (1-53)||(5014160-5014212)
[»] chr8 (3 HSPs)
chr8 (183-220)||(28535349-28535386)
chr8 (217-256)||(37173581-37173620)
chr8 (217-256)||(37177872-37177911)
[»] chr7 (1 HSPs)
chr7 (149-189)||(46437457-46437497)
[»] chr4 (1 HSPs)
chr4 (1-50)||(8903213-8903262)


Alignment Details
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 6154416 - 6154344
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 289  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6154416 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcacgttatttgttc 6154344  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 18431607 - 18431528
Alignment:
Q  149 ttcttctcttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 220  Q
    |||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||  |||||||||    
T  18431607 ttctcctcttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 18431528  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18431754 - 18431702
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 53  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||||||||    
T  18431754 cggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaa 18431702  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 22788019 - 22787946
Alignment:
Q  224 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttccttt 293  Q
    ||||||||||||||| ||||||||||||| |    || |||||||||||||||| ||| |||||||||||||||    
T  22788019 tattgacatggtactgcaatgaaaagaaaaattacttactgccacattctaattttcatgttatttgttccttt 22787946  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6154694 - 6154642
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 53  Q
    ||||||||| |||||||||| |||| ||||||| |||||| ||||||||||||    
T  6154694 cggatgtacgttgaaacatggtgtgacagctgcaacaccagattctagcctaa 6154642  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 22788317 - 22788280
Alignment:
Q  183 tcttcttacaaatcacaattcacaatctcctttcttct 220  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  22788317 tcttctcacaaatcacaattcacaatcttctttcttct 22788280  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 217 - 289
Target Start/End: Complemental strand, 424333 - 424261
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttc 289  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||||    
T  424333 ttctatgtattgacatggtactgcaatgaaaagaaacattactgccacattctaattctcgcgttatctgttc 424261  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 424742 - 424691
Alignment:
Q  138 gcgttgtttgtttcttctcttctctactctcacaaacaatcggtttcttctt 189  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  424742 gcgttgtttgtttcttctcttctcaactctcacaaacaatcggtttcttctt 424691  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 424875 - 424773
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa-nnnnnnnnnatatacataataacataagacacgggaaagtggaaat 99  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||||||          |||| |||||||||||||| || ||||||||||||||    
T  424875 cggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaatttttgttttatatgcataataacataaggcaggggaaagtggaaat 424776  T
Q  100 tgg 102  Q
    |||    
T  424775 tgg 424773  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 18113735 - 18113686
Alignment:
Q  140 gttgtttgtttcttctcttctctactctcacaaacaatcggtttcttctt 189  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18113735 gttgtttgtttcttctcttctctactctcacaaacaatctgtttcttctt 18113686  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 18113877 - 18113827
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcct 51  Q
    |||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  18113877 cggatgtacattgaaacatggtgtggcagttgccacaccagattctagcct 18113827  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 18108617 - 18108587
Alignment:
Q  261 ccacattctaattctcacgttatttgttcct 291  Q
    |||||||||||||||||||||||||||||||    
T  18108617 ccacattctaattctcacgttatttgttcct 18108587  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Complemental strand, 18113332 - 18113296
Alignment:
Q  220 tatgtattgacatggtactacaatgaaaagaaacatt 256  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  18113332 tatgtattgacatggtactgcaatgaaaagatacatt 18113296  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 52118779 - 52118853
Alignment:
Q  224 tattgacatggtactacaatgaaaagaaacattgctg----ccacattctaattctcacgttatttgttcctttg 294  Q
    ||||||||||||||| ||||||||||||| ||| ||     ||||||||||||||||| ||||||||||||||||    
T  52118779 tattgacatggtactgcaatgaaaagaaaaattacttactaccacattctaattctcatgttatttgttcctttg 52118853  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 26557106 - 26557180
Alignment:
Q  224 tattgacatggtactacaatgaaaagaaaca----ttgctgccacattctaattctcacgttatttgttcctttg 294  Q
    ||||||||||||||| || |||||||||| |    || |||||||||||||||| ||| ||||||||||||||||    
T  26557106 tattgacatggtactgcagtgaaaagaaaaattacttactgccacattctaattttcatgttatttgttcctttg 26557180  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 39163857 - 39163818
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacatt 256  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  39163857 ttctatgtattgacaaggaactacaatgaaaagaaacatt 39163818  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 26555662 - 26555699
Alignment:
Q  183 tcttcttacaaatcacaattcacaatctcctttcttct 220  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26555662 tcttctcacaaatcacaattcacaatcttctttcttct 26555699  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 52118481 - 52118514
Alignment:
Q  183 tcttcttacaaatcacaattcacaatctcctttc 216  Q
    |||||| |||||||||||||||||||||||||||    
T  52118481 tcttctcacaaatcacaattcacaatctcctttc 52118514  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 26555493 - 26555533
Alignment:
Q  12 tgaaacatgatgtggcagctgccacaccatattctagccta 52  Q
    ||||||||| ||||||||||||||||||| ||||| |||||    
T  26555493 tgaaacatggtgtggcagctgccacaccagattcttgccta 26555533  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 16916347 - 16916261
Alignment:
Q  145 ttgtttcttctc---ttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 220  Q
    ||||||||||||   |||||||||||||||||||||||||||||||||        ||||||||||||||||||||  |||||||||    
T  16916347 ttgtttcttctccttttctctactctcacaaacaatcggtttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 16916261  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16916485 - 16916433
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 53  Q
    |||||||| | ||||||||| |||| |||||||||||||| ||||||||||||    
T  16916485 cggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaa 16916433  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 5014054 - 5013975
Alignment:
Q  149 ttcttctcttctctactctcacaaacaatcggtttcttctt--------acaaatcacaattcacaatctcctttcttct 220  Q
    |||| |||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||  |||||||||    
T  5014054 ttctcctcttctctactctcacaaacaatcgatttcttcttctcttctcacaaatcacaattcacaatcgtctttcttct 5013975  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 14434623 - 14434669
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacattgctgcca 263  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||    
T  14434623 ttctatgtattgacaaggcactgcaatgaaaagaaacattgctgcca 14434669  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 16693155 - 16693192
Alignment:
Q  183 tcttcttacaaatcacaattcacaatctcctttcttct 220  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16693155 tcttctcacaaatcacaattcacaatctcctttcttct 16693192  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 20737835 - 20737754
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacattgctgccacattctaattctcacgttatttgttcctttgcttc 298  Q
    ||||||||||||| ||  || | |||||||||||||||||  |||||| |||||||||||||  ||| ||||||||| ||||    
T  20737835 ttctatgtattgaaatattattgcaatgaaaagaaacattattgccactttctaattctcacagtatatgttccttttcttc 20737754  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5014212 - 5014160
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 53  Q
    |||||||| | ||||||||| ||||||||||||||||||| |||||| |||||    
T  5014212 cggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 5014160  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 28535349 - 28535386
Alignment:
Q  183 tcttcttacaaatcacaattcacaatctcctttcttct 220  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28535349 tcttctcacaaatcacaattcacaatctcctttcttct 28535386  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 37173620 - 37173581
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacatt 256  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37173620 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37173581  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 256
Target Start/End: Complemental strand, 37177911 - 37177872
Alignment:
Q  217 ttctatgtattgacatggtactacaatgaaaagaaacatt 256  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  37177911 ttctatgtattgacaaggcactacaatgaaaagaaacatt 37177872  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 46437457 - 46437497
Alignment:
Q  149 ttcttctcttctctactctcacaaacaatcggtttcttctt 189  Q
    |||| ||||||| ||||||||||||||||||||||||||||    
T  46437457 ttctcctcttctttactctcacaaacaatcggtttcttctt 46437497  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 8903213 - 8903262
Alignment:
Q  1 cggatgtacattgaaacatgatgtggcagctgccacaccatattctagcc 50  Q
    ||||||||||||| | |||| |||||||||| |||||||| |||||||||    
T  8903213 cggatgtacattgtagcatggtgtggcagctaccacaccagattctagcc 8903262  T

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