View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_2 (Length: 626)
Name: NF10049_low_2
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 2943118 - 2943711
Alignment:
| Q |
18 |
ctgttcctattctttgcttataagatctgataggaaactggnnnnnnnnaaagattaataactggatgatccgtgatcacagttcatataaaagggcatt |
117 |
Q |
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| T |
2943118 |
ctgttcctattctttgcttataagatctgataggaaactgggtttttttaaagattaataacaggatgatccgtgatcacagttcatataaaagggcatt |
2943217 |
T |
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| Q |
118 |
gttaaaattataacgaaggaacatttagttcatataagaatttgtttggtcagattatctctagtcagtgagttgaattgactgcatcacatggcaagga |
217 |
Q |
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| T |
2943218 |
gtaaaaattataacgaaggaacatttagttcatataagaatttgtttggtcaaat-atctctagtcagtgagttgaattgactgcatcacatggcaagga |
2943316 |
T |
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| Q |
218 |
aaataacaaatgcatgtccagatacttatatttaattaaggtcactacacaatattaattagaatatgtttcaagtttggttatgttgtgttgcagtttg |
317 |
Q |
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| T |
2943317 |
aaataacaaatgcatgtccagatacttatatttaattaaggtcactacacaatattaattagaatatttttcaagtttggttatgttgtgttgcagtttg |
2943416 |
T |
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| Q |
318 |
attgctccaaagagatcacgttgatggaggtactatgctgaaccatttggtcaacttcagcatattgnnnnnnnaccattccagttgtatagtttcattg |
417 |
Q |
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| T |
2943417 |
attgctccaaagagatcacgttgatggaggtactatgctgaaccatttggtcaacttcagcatattgtttttttaccattccagttgtatagtttcattg |
2943516 |
T |
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| Q |
418 |
atcttcaagtttaggtatttaatttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgaggttacaacccgatcattcaaaatttac |
517 |
Q |
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| T |
2943517 |
atcttcaagtttaggtatttaatttttattgaacactgttcaggagcaatttttgatcatgaagccaaatgagattacaacccgatcattcaaaatttac |
2943616 |
T |
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| Q |
518 |
ccaagcaccgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattcttatttctgacgtgtatacagaaaatgttgatgt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
2943617 |
ccaagcaccgaccaagcttccaaatattcctgtgcaggtaaagttgaagcttaatatattgttatttctgacatgtatacagaaaatgttgatgt |
2943711 |
T |
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