View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_20 (Length: 302)
Name: NF10049_low_20
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 40513161 - 40513443
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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| T |
40513161 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40513260 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513261 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40513360 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataag |
285 |
Q |
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| T |
40513361 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataag |
40513443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 40482487 - 40482768
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
40482487 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40482586 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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| T |
40482587 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40482686 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482687 |
gctgaagtacctaagagcaatcttagaataggtaagaacaagttctcctctaccaaaaaccttggaagaaggagcaacataa |
40482768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 21611865 - 21611821
Alignment:
| Q |
239 |
aacaagttctcctctaccaaaaaccttggaagaaggagcaacata |
283 |
Q |
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| T |
21611865 |
aacaagttctcctctcccaaaaaccctagaagaaggtgcaacata |
21611821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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