View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10049_low_23 (Length: 289)
Name: NF10049_low_23
Description: NF10049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10049_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 12035532 - 12035797
Alignment:
| Q |
1 |
gatgactagtaaacctcttttgattcctgtagtaccaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaagaggagaattttg |
100 |
Q |
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| T |
12035532 |
gatggctagtaaacctcttttgattcctgcagtacaaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaagaggagaattttg |
12035631 |
T |
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| Q |
101 |
tctgttgcatatatctagcgcctcggtaatagatgtgaaattgcagagagtatttatcttagagctgagccaatgccaaattttcttagccaaactgcat |
200 |
Q |
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| T |
12035632 |
tttgttgcatatatctagcgcctcggtaatagatgtgaaattgtagagagtatttatcttagagctgagcaaatgccaaattttctaagccaaactgcat |
12035731 |
T |
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| Q |
201 |
tcaaaaaacaaatgctgaaaagattcaccttgagcactatacagactgcacatggatggaaattga |
266 |
Q |
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| T |
12035732 |
tcaaaaaacaaatgctgaaaagattcaccttgagcactacacagactgcacatggatggaaattga |
12035797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 22162751 - 22163007
Alignment:
| Q |
10 |
taaacctcttttgattcctgtagtaccaaataatattgaagcaatatataactgcaactagaaccaccatcttgcaaagaggagaattttgtctgttgca |
109 |
Q |
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||||||| |||||||||||| |||||||||| || ||||||| ||| | ||||||| ||||||||||| |||||||||||||||| |||| || || | |
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| T |
22162751 |
taaaccttttttgattcctgcagtaccaaatgatgttgaagccataaacaactgcagttagaaccaccagcttgcaaagaggagaactttgcctattaga |
22162850 |
T |
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| Q |
110 |
tatatctagcgcctcggtaatagatgtgaaattgcagagagtatttatcttagagctgagccaatgccaaattttcttagccaaactgcattcaaaaaac |
209 |
Q |
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|||||||| ||||| ||||||||| ||| || || ||||||| || ||| || | |||||||| |||||||| | |||||| | |||| ||||| ||| |
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| T |
22162851 |
aatatctagagcctcattaatagatgagaagttacaaagagtatctaactttgaaccgagccaataccaaatttccctagccatattgcactcaaagaac |
22162950 |
T |
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| Q |
210 |
aaatgctgaaaagattcaccttgagcactatacagactgcacatggatggaaattga |
266 |
Q |
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||||| || || ||||| |||||| | || | ||||| |||||||| |||| |||| |
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| T |
22162951 |
aaatgatggaatgattccccttgaatattacaaagactacacatggagggaagttga |
22163007 |
T |
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